codecov.yml

name: test-coverage

on:
  push:
    branches:
      - main
jobs:
  test:
    runs-on: ubuntu-latest

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      GITHUB_PAT: ${{secrets.GH_GCAMREPORT_TOKEN}}

    steps:
      - uses: actions/checkout@v2
      - uses: r-lib/actions/setup-r@v2-branch
        with:
          r-version: '4.1.0'
      - uses: r-lib/actions/setup-pandoc@v2-branch
      - uses: r-lib/actions/setup-tinytex@v2-branch
      - uses: actions/download-artifact@v2

      - name: Cache R packages
        uses: actions/cache@v1
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Ubuntu config
        run: |
          sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable
          sudo apt-get update
          sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev

      - name: Install dependencies
        run: |
          install.packages(c("remotes","rcmdcheck","covr"), repos = "https://cloud.r-project.org")
          remotes::install_github("JGCRI/rpackageutils")
          remotes::install_deps(dependencies = TRUE)
        shell: Rscript {0}

      - name: Upload coverage reports to Codecov
        uses: codecov/codecov-action@v4.0.1
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          slug: bc3LC/rfasstui