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RATs source package v0.1.0
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@fruce-ki fruce-ki released this 30 Aug 16:55
· 421 commits to master since this release
v0.1.0
db42a45

v0.1.0 - Initial Public Release of RATs.

rats is an R package with which to call Differential Transcript Usage from RNA-seq transcript abundance estimates.

Features

  1. Supports data input as either a Sleuth object or generic tables.
  2. DTU called at both the transcript level and gene level.
  3. Bootstrapped abundance estimates leveraged to provide confidence level in DTU calls.
  4. Basic summary and plotting functionality built-in for convenience.
  5. Fast and efficient R code. On a good laptop: 20 secs without bootstrapping, +15secs per bootstrap iteration.
  6. Written exclusively in R language and distributed as a source package. Compatible with all platforms that have an R engine and meet the package dependencies.
  7. Extensive usage tutorial.
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