diff --git a/extras/F1000_manuscript/Analysis_scripts/analysis_1.Rmd b/extras/F1000_manuscript/Analysis_scripts/gen_extended_data_1.Rmd similarity index 100% rename from extras/F1000_manuscript/Analysis_scripts/analysis_1.Rmd rename to extras/F1000_manuscript/Analysis_scripts/gen_extended_data_1.Rmd diff --git a/extras/F1000_manuscript/Analysis_scripts/analysis_2.Rmd b/extras/F1000_manuscript/Analysis_scripts/gen_extended_data_2.Rmd similarity index 100% rename from extras/F1000_manuscript/Analysis_scripts/analysis_2.Rmd rename to extras/F1000_manuscript/Analysis_scripts/gen_extended_data_2.Rmd diff --git a/extras/F1000_manuscript/Analysis_scripts/analysis_3.Rmd b/extras/F1000_manuscript/Analysis_scripts/gen_extended_data_5.Rmd similarity index 100% rename from extras/F1000_manuscript/Analysis_scripts/analysis_3.Rmd rename to extras/F1000_manuscript/Analysis_scripts/gen_extended_data_5.Rmd diff --git a/extras/F1000_manuscript/Analysis_scripts/analysis_1.html b/extras/F1000_manuscript/Extended_data/Extended_Data_1.html similarity index 100% rename from extras/F1000_manuscript/Analysis_scripts/analysis_1.html rename to extras/F1000_manuscript/Extended_data/Extended_Data_1.html diff --git a/extras/F1000_manuscript/Analysis_scripts/analysis_2.html b/extras/F1000_manuscript/Extended_data/Extended_Data_2.html similarity index 100% rename from extras/F1000_manuscript/Analysis_scripts/analysis_2.html rename to extras/F1000_manuscript/Extended_data/Extended_Data_2.html diff --git a/extras/F1000_manuscript/Extended_data/Supplementary_gene_list_1.txt b/extras/F1000_manuscript/Extended_data/Extended_Data_3.txt similarity index 100% rename from extras/F1000_manuscript/Extended_data/Supplementary_gene_list_1.txt rename to extras/F1000_manuscript/Extended_data/Extended_Data_3.txt diff --git a/extras/F1000_manuscript/Extended_data/Supplementary_gene_list_2.txt b/extras/F1000_manuscript/Extended_data/Extended_Data_4.txt similarity index 100% rename from extras/F1000_manuscript/Extended_data/Supplementary_gene_list_2.txt rename to extras/F1000_manuscript/Extended_data/Extended_Data_4.txt diff --git a/extras/F1000_manuscript/Analysis_scripts/analysis_3.html b/extras/F1000_manuscript/Extended_data/Extended_Data_5.html similarity index 100% rename from extras/F1000_manuscript/Analysis_scripts/analysis_3.html rename to extras/F1000_manuscript/Extended_data/Extended_Data_5.html diff --git a/extras/F1000_manuscript/Extended_data/Supplementary_figure_1.docx b/extras/F1000_manuscript/Extended_data/Extended_Data_6.docx similarity index 100% rename from extras/F1000_manuscript/Extended_data/Supplementary_figure_1.docx rename to extras/F1000_manuscript/Extended_data/Extended_Data_6.docx diff --git a/extras/F1000_manuscript/f1000researchpreprint.pdf b/extras/F1000_manuscript/f1000researchpreprint.pdf new file mode 100644 index 0000000..c83997d Binary files /dev/null and b/extras/F1000_manuscript/f1000researchpreprint.pdf differ