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Revert "Merge branch 'development'"
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This reverts commit 18be0f7, reversing
changes made to 4a13461.
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@fruce-ki
fruce-ki committed Apr 19, 2017
1 parent 18be0f7 commit 9f5a9f7
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11 changes: 3 additions & 8 deletions README.md
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Expand Up @@ -69,14 +69,9 @@ Download the latest release and then install it using:

`install.packages("<path/to/downloaded/package>", repos = NULL, type="source")`

The latest release can also be directly installed from github, using the `devtools` package:

`devtools::install_github("bartongroup/rats", ref="master")`

2. For testing purposes (bug resolutions, new features), you can install the ongoing developmental version from Github:
`devtools::install_github("bartongroup/rats", ref="development")`
Developmental versions are works in progress and will not be archived in snapshots. For reproducible/publishable analyses,
**always use a release version**, NOT a developmental version.
2. For testing purposes (bug resolutions, new features), you can install the ongoing developmental version from Github, (you will also need to have the `devtools` package installed):
`devtools::install_github("bartongroup/rats")`
Developmental versions are works in progress and will not be archived. For publishable analyses, **always use a release version**, NOT a developmental version.


### Differential Transcript Usage
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9 changes: 3 additions & 6 deletions inst/doc/intro.Rmd
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Expand Up @@ -67,10 +67,6 @@ Download the latest release and then install it using:

`install.packages("<path/to/dowloaded/package>", repos = NULL, type="source")`

Or install directly with the help of the [devtools](https://www.rstudio.com/products/rpackages/devtools/) package:

`devtools::install_github("bartongroup/rats", ref="master")`

Release snapshots are labelled with even-ending version numbers (x.x.0/2/4/6/8).

#### through Bioconductor
Expand All @@ -79,9 +75,10 @@ Not available yet.

#### developmental version

The most current developmental version of `rats` can be installed directly from the working copy on Github, using `devtools`:
The most current developmental version of `rats` can be installed directly from the working copy on Github, using the [devtools](https://www.rstudio.com/products/rpackages/devtools/) package
(which you will need to install first):

`devtools::install_github("bartongroup/rats", ref="development")`
`devtools::install_github("bartongroup/rats")`

As this version represents active development, it can change at any moment. Features may be added, removed or changed without notice.
**Do not rely on this version for reproducible analysis of important data!**
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9 changes: 3 additions & 6 deletions inst/doc/intro.html
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Expand Up @@ -245,10 +245,6 @@ <h4>from Github</h4>

<p><code>install.packages(&quot;&lt;path/to/dowloaded/package&gt;&quot;, repos = NULL, type=&quot;source&quot;)</code></p>

<p>Or install directly with the help of the <a href="https://www.rstudio.com/products/rpackages/devtools/">devtools</a> package:</p>

<p><code>devtools::install_github(&quot;bartongroup/rats&quot;, ref=&quot;master&quot;)</code></p>

<p>Release snapshots are labelled with even-ending version numbers (x.x.0/2/4/6/8).</p>

<h4>through Bioconductor</h4>
Expand All @@ -257,9 +253,10 @@ <h4>through Bioconductor</h4>

<h4>developmental version</h4>

<p>The most current developmental version of <code>rats</code> can be installed directly from the working copy on Github, using <code>devtools</code>:</p>
<p>The most current developmental version of <code>rats</code> can be installed directly from the working copy on Github, using the <a href="https://www.rstudio.com/products/rpackages/devtools/">devtools</a> package
(which you will need to install first):</p>

<p><code>devtools::install_github(&quot;bartongroup/rats&quot;, ref=&quot;development&quot;)</code></p>
<p><code>devtools::install_github(&quot;bartongroup/rats&quot;)</code></p>

<p>As this version represents active development, it can change at any moment. Features may be added, removed or changed without notice.
<strong>Do not rely on this version for reproducible analysis of important data!</strong>
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6 changes: 3 additions & 3 deletions inst/doc/plots.html
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9 changes: 3 additions & 6 deletions vignettes/intro.Rmd
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Expand Up @@ -67,10 +67,6 @@ Download the latest release and then install it using:

`install.packages("<path/to/dowloaded/package>", repos = NULL, type="source")`

Or install directly with the help of the [devtools](https://www.rstudio.com/products/rpackages/devtools/) package:

`devtools::install_github("bartongroup/rats", ref="master")`

Release snapshots are labelled with even-ending version numbers (x.x.0/2/4/6/8).

#### through Bioconductor
Expand All @@ -79,9 +75,10 @@ Not available yet.

#### developmental version

The most current developmental version of `rats` can be installed directly from the working copy on Github, using `devtools`:
The most current developmental version of `rats` can be installed directly from the working copy on Github, using the [devtools](https://www.rstudio.com/products/rpackages/devtools/) package
(which you will need to install first):

`devtools::install_github("bartongroup/rats", ref="development")`
`devtools::install_github("bartongroup/rats")`

As this version represents active development, it can change at any moment. Features may be added, removed or changed without notice.
**Do not rely on this version for reproducible analysis of important data!**
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