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testdata.gtf
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14 protein_coding exon 50065415 50065921 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; exon_id "ENSE00001345606";
14 protein_coding CDS 50065739 50065921 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; protein_id "ENSP00000298288";
14 protein_coding start_codon 50065739 50065741 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001";
14 protein_coding exon 50069088 50069186 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; exon_id "ENSE00003232092";
14 protein_coding CDS 50069088 50069186 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; protein_id "ENSP00000298288";
14 protein_coding exon 50074118 50074839 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; exon_id "ENSE00003344755";
14 protein_coding CDS 50074118 50074839 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; protein_id "ENSP00000298288";
14 protein_coding exon 50080974 50081390 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "4"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; exon_id "ENSE00001874102";
14 protein_coding CDS 50080974 50081211 . + 1 gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "4"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001"; protein_id "ENSP00000298288";
14 protein_coding stop_codon 50081212 50081214 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000298288"; exon_number "4"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-001";
14 protein_coding exon 50065479 50065921 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002"; exon_id "ENSE00001950714";
14 protein_coding CDS 50065739 50065921 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002"; protein_id "ENSP00000315628";
14 protein_coding start_codon 50065739 50065741 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002";
14 protein_coding exon 50069088 50069186 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002"; exon_id "ENSE00003232092";
14 protein_coding CDS 50069088 50069186 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002"; protein_id "ENSP00000315628";
14 protein_coding exon 50080974 50081388 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002"; exon_id "ENSE00001861212";
14 protein_coding CDS 50080974 50081129 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002"; protein_id "ENSP00000315628";
14 protein_coding stop_codon 50081130 50081132 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000318317"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-002";
14 nonsense_mediated_decay exon 50065493 50065921 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; exon_id "ENSE00001924767";
14 nonsense_mediated_decay CDS 50065739 50065921 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; protein_id "ENSP00000452355";
14 nonsense_mediated_decay start_codon 50065739 50065741 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003";
14 nonsense_mediated_decay exon 50069088 50069186 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; exon_id "ENSE00003232092";
14 nonsense_mediated_decay CDS 50069088 50069186 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; protein_id "ENSP00000452355";
14 nonsense_mediated_decay exon 50070270 50070336 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; exon_id "ENSE00001408232";
14 nonsense_mediated_decay CDS 50070270 50070336 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; protein_id "ENSP00000452355";
14 nonsense_mediated_decay exon 50074118 50074839 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "4"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; exon_id "ENSE00003292544";
14 nonsense_mediated_decay CDS 50074118 50074167 . + 2 gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "4"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; protein_id "ENSP00000452355";
14 nonsense_mediated_decay stop_codon 50074168 50074170 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "4"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003";
14 nonsense_mediated_decay exon 50079190 50079342 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "5"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; exon_id "ENSE00002519316";
14 nonsense_mediated_decay exon 50080974 50081389 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000554869"; exon_number "6"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-003"; exon_id "ENSE00001698164";
14 nonsense_mediated_decay exon 50065670 50065921 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004"; exon_id "ENSE00002245191";
14 nonsense_mediated_decay CDS 50065739 50065921 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004"; protein_id "ENSP00000439452";
14 nonsense_mediated_decay start_codon 50065739 50065741 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004";
14 nonsense_mediated_decay exon 50068260 50068367 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004"; exon_id "ENSE00002225710";
14 nonsense_mediated_decay CDS 50068260 50068268 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004"; protein_id "ENSP00000439452";
14 nonsense_mediated_decay stop_codon 50068269 50068271 . + 0 gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004";
14 nonsense_mediated_decay exon 50069088 50069186 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "3"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004"; exon_id "ENSE00003399822";
14 nonsense_mediated_decay exon 50074118 50074839 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "4"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004"; exon_id "ENSE00003364443";
14 nonsense_mediated_decay exon 50080974 50081389 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000540712"; exon_number "5"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-004"; exon_id "ENSE00001698164";
14 processed_transcript exon 50067130 50067415 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000557531"; exon_number "1"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-005"; exon_id "ENSE00002487499";
14 processed_transcript exon 50074118 50074227 . + . gene_id "ENSG00000165501"; transcript_id "ENST00000557531"; exon_number "2"; gene_name "LRR1"; gene_biotype "protein_coding"; transcript_name "LRR1-005"; exon_id "ENSE00002496415";