new file: Makefile

paper/Makefile

@@ -0,0 +1,49 @@
+# =============================================================================
+# @file    Makefile
+# @brief   Makefile for generating previews of the paper
+# @author  Michael Hucka <mhucka@caltech.edu>
+# @license Please see the file named LICENSE in the project directory
+# @website https://github.com/casics/dassie
+# =============================================================================
+
+# Change the following values to match your configuration.
+# .............................................................................
+
+assets   := assets
+input    := paper.md
+output   := paper.pdf
+bib      := paper.bib
+bibstyle := apa.csl
+
+# Main code -- no more customization variables after this point
+# .............................................................................
+
+title	:= $(shell grep title: $(input) | sed 's/title: *//' | tr -d "'")
+authors := $(shell sed -n '/authors:/,/affiliations:/p' $(input) | grep name: | sed 's/- name: *//' | paste -d, -s - | sed 's/,/, /g')
+repo	:= $(shell git remote get-url origin | sed 's|git@github.com:|https://github.com/|' | sed 's/\.git//')
+
+$(output): $(input) $(bib) Makefile
+	pandoc \
+	--from markdown+autolink_bare_uris+implicit_figures \
+	-V paper_title="$(title)" \
+	-V citation_author="$(authors)" \
+	-V repository="$(repo)" \
+	-V archive_doi="http://dx.doi.org/00.00000/zenodo.0000000" \
+	-V formatted_doi="00.00000/joss.00000" \
+	-V paper_url="http://joss.theoj.org/papers/" \
+	-V review_issue_url="http://joss.theoj.org/papers/" \
+	-V issue="0" \
+	-V volume="00" \
+	-V year="2020" \
+	-V submitted="25 February 2020" \
+	-V published="25 February 2020" \
+	-V page="00" \
+	-V graphics="true" \
+	-V geometry:margin=1in \
+	-V logo_path=$(assets)/logo.png \
+	--filter pandoc-citeproc --csl $(assets)/$(bibstyle) \
+	--template $(assets)/latex.template \
+	$< -o $@ \
+
+clean:
+	rm -rf *.pdf