pyproject.toml

[build-system]
requires = ["flit_core >=3.2,<4"]
build-backend = "flit_core.buildapi"

[project]
name = "drtransformer"
description = "Heuristic cotranscriptional folding using the nearest neighbor energy model."
authors = [{name = "Stefan Badelt", email = "bad-ants-fleet@posteo.eu"}]
readme = "README.md"
keywords = ["cotranscriptional folding", "RNA", "secondary structure"]
license = {file = "LICENSE"}
classifiers = [
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "License :: OSI Approved :: MIT License",
    "Development Status :: 5 - Production/Stable",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
requires-python = ">=3.8"
dependencies = [
    "packaging",
    "numpy",
    "scipy",
    "matplotlib",
]
dynamic = ["version"]

[project.scripts]
DrTransformer = "drtransformer.drtransformer:main"
DrPlotter = "drtransformer.plotting:main"
## The following scripts are not necessarily well maintained,
## but certainly helpful if you want to coarse-grain, simulate,
## or use the findpath function of DrTransformer.
#DrFindpath = "drtransformer.rnafolding:call_findpath_exe"
#DrCoarseGrain = "drtransformer.rnafolding:top_down_coarse_graining_exe"
#DrSimulate = "drtransformer.linalg:main"

[project.optional-dependencies]
dev = [
    "pytest",
]

[project.urls]
Home = "https://github.com/ViennaRNA/drtransformer"