Evaluating gzipped FASTQ files? #284
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willbradshaw
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I have a bunch of processes that output gzipped fastq files, and I'd like to test these for validity, check the number of records etc. Currently I'm doing this very primitively, by counting the number of raw lines with
linesGzip, confirming they're a multiple of 4, etc. I'd love to use the tools in the nft-fastq plugin instead but I can't seem to get this working with gzipped files. Is there currently support for this?Beta Was this translation helpful? Give feedback.
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