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diff --git a/.buildinfo b/.buildinfo
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+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 31541246716161df22c683109b7b1bd0
+tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.doctrees/aim2fe.doctree b/.doctrees/aim2fe.doctree
diff --git a/.doctrees/check_props_recovery.doctree b/.doctrees/check_props_recovery.doctree
diff --git a/.doctrees/configuration.doctree b/.doctrees/configuration.doctree
diff --git a/.doctrees/contributing.doctree b/.doctrees/contributing.doctree
diff --git a/.doctrees/create_loadcases.doctree b/.doctrees/create_loadcases.doctree
diff --git a/.doctrees/development.doctree b/.doctrees/development.doctree
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/f_decomposition.doctree b/.doctrees/f_decomposition.doctree
diff --git a/.doctrees/hfe_accurate_pipeline.doctree b/.doctrees/hfe_accurate_pipeline.doctree
diff --git a/.doctrees/imutils.doctree b/.doctrees/imutils.doctree
diff --git a/.doctrees/index.doctree b/.doctrees/index.doctree
diff --git a/.doctrees/installation.doctree b/.doctrees/installation.doctree
diff --git a/.doctrees/io_utils.doctree b/.doctrees/io_utils.doctree
diff --git a/.doctrees/material_mapping.doctree b/.doctrees/material_mapping.doctree
diff --git a/.doctrees/modules.doctree b/.doctrees/modules.doctree
diff --git a/.doctrees/odb2vtk_wrapper.doctree b/.doctrees/odb2vtk_wrapper.doctree
diff --git a/.doctrees/pipeline_runner.doctree b/.doctrees/pipeline_runner.doctree
diff --git a/.doctrees/postprocessing.doctree b/.doctrees/postprocessing.doctree
diff --git a/.doctrees/preprocessing.doctree b/.doctrees/preprocessing.doctree
diff --git a/.doctrees/print_optim_report.doctree b/.doctrees/print_optim_report.doctree
diff --git a/.doctrees/project_normals_cortex.doctree b/.doctrees/project_normals_cortex.doctree
diff --git a/.doctrees/read_mech_params.doctree b/.doctrees/read_mech_params.doctree
diff --git a/.doctrees/simulation.doctree b/.doctrees/simulation.doctree
diff --git a/.doctrees/struct_voxel_indices.doctree b/.doctrees/struct_voxel_indices.doctree
diff --git a/.doctrees/surface_nets.doctree b/.doctrees/surface_nets.doctree
diff --git a/.doctrees/write_abaqus.doctree b/.doctrees/write_abaqus.doctree
diff --git a/.nojekyll b/.nojekyll
diff --git a/_modules/aim2fe.html b/_modules/aim2fe.html
diff --git a/_modules/check_props_recovery.html b/_modules/check_props_recovery.html
diff --git a/_modules/create_loadcases.html b/_modules/create_loadcases.html
diff --git a/_modules/f_decomposition.html b/_modules/f_decomposition.html
diff --git a/_modules/hfe_accurate_pipeline.html b/_modules/hfe_accurate_pipeline.html
diff --git a/_modules/imutils.html b/_modules/imutils.html
diff --git a/_modules/index.html b/_modules/index.html
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+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Overview: module code &mdash; homogenised-finite-elements 0.9.0 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
+
+
+  <!--[if lt IE 9]>
+    <script src="../_static/js/html5shiv.min.js"></script>
+  <![endif]-->
+
+        <script src="../_static/documentation_options.js?v=39bb1c6d"></script>
+        <script src="../_static/doctools.js?v=9a2dae69"></script>
+        <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
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+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
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+<body class="wy-body-for-nav"> 
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+          <a href="../index.html" class="icon icon-home">
+            homogenised-finite-elements
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules.html">Getting Started</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../modules.html#homogenised-finite-elements-pipeline">Homogenised Finite Elements Pipeline</a></li>
+</ul>
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+        </div>
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+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Overview: module code</li>
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+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+
+  <h1>All modules for which code is available</h1>
+<ul><li><a href="aim2fe.html">aim2fe</a></li>
+<li><a href="check_props_recovery.html">check_props_recovery</a></li>
+<li><a href="create_loadcases.html">create_loadcases</a></li>
+<li><a href="f_decomposition.html">f_decomposition</a></li>
+<li><a href="hfe_accurate_pipeline.html">hfe_accurate_pipeline</a></li>
+<li><a href="imutils.html">imutils</a></li>
+<li><a href="io_utils.html">io_utils</a></li>
+<li><a href="material_mapping.html">material_mapping</a></li>
+<li><a href="odb2vtk_wrapper.html">odb2vtk_wrapper</a></li>
+<li><a href="pipeline_runner.html">pipeline_runner</a></li>
+<li><a href="postprocessing.html">postprocessing</a></li>
+<li><a href="preprocessing.html">preprocessing</a></li>
+<li><a href="print_optim_report.html">print_optim_report</a></li>
+<li><a href="project_normals_cortex.html">project_normals_cortex</a></li>
+<li><a href="read_mech_params.html">read_mech_params</a></li>
+<li><a href="simulation.html">simulation</a></li>
+<li><a href="write_abaqus.html">write_abaqus</a></li>
+</ul>
+
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