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environment.yml
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name: tmcom
channels:
- defaults
- conda-forge
dependencies:
- anyio=3.5.0=py39hecd8cb5_0
- appnope=0.1.2=py39hecd8cb5_1001
- argon2-cffi=21.3.0=pyhd3eb1b0_0
- argon2-cffi-bindings=21.2.0=py39hca72f7f_0
- asttokens=2.0.5=pyhd3eb1b0_0
- attrs=22.1.0=py39hecd8cb5_0
- babel=2.11.0=py39hecd8cb5_0
- backcall=0.2.0=pyhd3eb1b0_0
- beautifulsoup4=4.11.1=py39hecd8cb5_0
- blas=1.0=openblas
- bleach=4.1.0=pyhd3eb1b0_0
- bottleneck=1.3.5=py39h67323c0_0
- brotli=1.0.9=hca72f7f_7
- brotli-bin=1.0.9=hca72f7f_7
- brotlipy=0.7.0=py39h9ed2024_1003
- ca-certificates=2023.01.10=hecd8cb5_0
- certifi=2022.12.7=py39hecd8cb5_0
- cffi=1.15.1=py39hc55c11b_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- comm=0.1.2=py39hecd8cb5_0
- contourpy=1.0.5=py39haf03e11_0
- cryptography=37.0.1=py39hf6deb26_0
- cycler=0.11.0=pyhd3eb1b0_0
- debugpy=1.5.1=py39he9d5cce_0
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- entrypoints=0.4=py39hecd8cb5_0
- executing=0.8.3=pyhd3eb1b0_0
- flit-core=3.6.0=pyhd3eb1b0_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.12.1=hd8bbffd_0
- gettext=0.21.0=h7535e17_0
- giflib=5.2.1=h6c40b1e_3
- glib=2.69.1=h8346a28_1
- gst-plugins-base=1.14.1=hcec6c5f_1
- gstreamer=1.14.1=h6c40b1e_1
- icu=58.2=h0a44026_3
- idna=3.4=py39hecd8cb5_0
- importlib-metadata=4.11.3=py39hecd8cb5_0
- intel-openmp=2021.4.0=hecd8cb5_3538
- ipykernel=6.19.2=py39h01d92e1_0
- ipython=8.10.0=py39hecd8cb5_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=7.6.5=pyhd3eb1b0_1
- jedi=0.18.1=py39hecd8cb5_1
- jpeg=9e=hca72f7f_0
- json5=0.9.6=pyhd3eb1b0_0
- jupyter=1.0.0=py39hecd8cb5_8
- jupyter_client=7.4.9=py39hecd8cb5_0
- jupyter_console=6.4.4=py39hecd8cb5_0
- jupyter_core=5.2.0=py39hecd8cb5_0
- jupyter_server=1.23.4=py39hecd8cb5_0
- jupyterlab=3.5.3=py39hecd8cb5_0
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_server=2.19.0=py39hecd8cb5_0
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- kiwisolver=1.4.4=py39hcec6c5f_0
- krb5=1.19.4=hdba6334_0
- lcms2=2.12=hf1fd2bf_0
- lerc=3.0=he9d5cce_0
- libbrotlicommon=1.0.9=hca72f7f_7
- libbrotlidec=1.0.9=hca72f7f_7
- libbrotlienc=1.0.9=hca72f7f_7
- libclang=12.0.0=default_hbc2896b_2
- libcxx=14.0.6=h9765a3e_0
- libdeflate=1.17=hb664fd8_0
- libedit=3.1.20221030=h6c40b1e_0
- libffi=3.3=hb1e8313_2
- libgfortran=5.0.0=11_3_0_hecd8cb5_28
- libgfortran5=11.3.0=h9dfd629_28
- libiconv=1.16=hca72f7f_2
- libllvm12=12.0.0=h9b2ccf5_3
- libopenblas=0.3.21=h54e7dc3_0
- libpng=1.6.37=ha441bb4_0
- libpq=12.9=h1c9f633_3
- libsodium=1.0.18=h1de35cc_0
- libtiff=4.5.0=hcec6c5f_2
- libwebp=1.2.4=hf6ce154_1
- libwebp-base=1.2.4=h6c40b1e_1
- libxml2=2.9.14=hbf8cd5e_0
- libxslt=1.1.35=h5b33f42_0
- llvm-openmp=14.0.6=h0dcd299_0
- lxml=4.9.1=py39h65b224f_0
- lz4-c=1.9.4=hcec6c5f_0
- matplotlib=3.6.2=py39hecd8cb5_0
- matplotlib-base=3.6.2=py39h220de94_0
- matplotlib-inline=0.1.6=py39hecd8cb5_0
- mistune=0.8.4=py39h9ed2024_1000
- mkl=2021.4.0=hecd8cb5_637
- mkl-service=2.4.0=py39h9ed2024_0
- mkl_fft=1.3.1=py39h7ae3660_1
- mkl_random=1.2.2=py39h4d6be9b_0
- munkres=1.1.4=py_0
- nbclassic=0.5.2=py39hecd8cb5_0
- nbclient=0.5.13=py39hecd8cb5_0
- nbformat=5.7.0=py39hecd8cb5_0
- ncurses=6.4=hcec6c5f_0
- nest-asyncio=1.5.6=py39hecd8cb5_0
- nomkl=3.0=0
- notebook=6.5.2=py39hecd8cb5_0
- notebook-shim=0.2.2=py39hecd8cb5_0
- nspr=4.33=he9d5cce_0
- nss=3.74=h47edf6a_0
- numexpr=2.8.4=py39h57a7bef_0
- numpy=1.23.5=py39h57a7bef_0
- numpy-base=1.23.5=py39hc93c6d9_0
- openssl=1.1.1t=hca72f7f_0
- packaging=22.0=py39hecd8cb5_0
- pandas=1.5.2=py39h07fba90_0
- pandocfilters=1.5.0=pyhd3eb1b0_0
- parso=0.8.3=pyhd3eb1b0_0
- pcre=8.45=h23ab428_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=9.4.0=py39hcec6c5f_0
- pip=22.3.1=py39hecd8cb5_0
- platformdirs=2.5.2=py39hecd8cb5_0
- ply=3.11=py39hecd8cb5_0
- prometheus_client=0.14.1=py39hecd8cb5_0
- prompt-toolkit=3.0.36=py39hecd8cb5_0
- prompt_toolkit=3.0.36=hd3eb1b0_0
- psutil=5.9.0=py39hca72f7f_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.9=py39hecd8cb5_0
- pyqt=5.15.7=py39he9d5cce_0
- pyqt5-sip=12.11.0=py39he9d5cce_0
- pyrsistent=0.18.0=py39hca72f7f_0
- pysocks=1.7.1=py39hecd8cb5_0
- python=3.9.12=hdfd78df_1
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.16.2=py39hecd8cb5_0
- python_abi=3.9=2_cp39
- pytz=2022.7=py39hecd8cb5_0
- pyzmq=23.2.0=py39he9d5cce_0
- qt-main=5.15.2=h719ae48_7
- qt-webengine=5.15.9=h90a370e_4
- qtconsole=5.4.0=py39hecd8cb5_0
- qtpy=2.2.0=py39hecd8cb5_0
- qtwebkit=5.212=h24dc246_4
- readline=8.2=hca72f7f_0
- requests=2.28.1=py39hecd8cb5_0
- send2trash=1.8.0=pyhd3eb1b0_1
- setuptools=65.6.3=py39hecd8cb5_0
- sip=6.6.2=py39he9d5cce_0
- six=1.16.0=pyhd3eb1b0_1
- sniffio=1.2.0=py39hecd8cb5_1
- soupsieve=2.3.2.post1=py39hecd8cb5_0
- sqlite=3.40.1=h880c91c_0
- stack_data=0.2.0=pyhd3eb1b0_0
- terminado=0.17.1=py39hecd8cb5_0
- tinycss2=1.2.1=py39hecd8cb5_0
- tk=8.6.12=h5d9f67b_0
- toml=0.10.2=pyhd3eb1b0_0
- tomli=2.0.1=py39hecd8cb5_0
- tornado=6.2=py39hca72f7f_0
- traitlets=5.7.1=py39hecd8cb5_0
- typing-extensions=4.4.0=py39hecd8cb5_0
- typing_extensions=4.4.0=py39hecd8cb5_0
- tzdata=2022g=h04d1e81_0
- urllib3=1.26.14=py39hecd8cb5_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- webencodings=0.5.1=py39hecd8cb5_1
- websocket-client=0.58.0=py39hecd8cb5_4
- wheel=0.38.4=py39hecd8cb5_0
- widgetsnbextension=3.5.2=py39hecd8cb5_0
- xz=5.2.10=h6c40b1e_1
- zeromq=4.3.4=h23ab428_0
- zipp=3.11.0=py39hecd8cb5_0
- zlib=1.2.13=h4dc903c_0
- zstd=1.5.2=hcb37349_0
- pip:
- alembic==1.9.4
- appdirs==1.4.4
- async-generator==1.10
- atomicwrites==1.4.1
- bs4==0.0.1
- certipy==0.1.3
- cobra==0.26.2
- cplex==22.1.1.0
- depinfo==1.7.0
- diskcache==5.4.0
- docplex==2.25.236
- escher==1.7.3
- et-xmlfile==1.1.0
- filelock==3.10.7
- future==0.18.3
- gurobipy==10.0.1
- h11==0.14.0
- html5lib==1.1
- httpcore==0.16.3
- httpx==0.23.3
- importlib-resources==5.12.0
- inspyred==1.0.1
- jinja2==2.11.3
- jmetalpy==1.5.5
- jsonschema==3.2.0
- jupyter-telemetry==0.1.0
- jupyterhub==3.1.1
- mako==1.2.4
- markdown-it-py==2.2.0
- markupsafe==2.0.1
- mdurl==0.1.2
- more-itertools==9.1.0
- nbconvert==6.4.5
- neovim==0.3.1
- networkx==3.0
- oauthlib==3.2.2
- openpyxl==3.1.1
- optlang==1.6.1
- pamela==1.0.0
- patsy==0.5.3
- plotly==5.13.1
- pluggy==0.13.1
- py==1.11.0
- pydantic==1.10.5
- pygments==2.14.0
- pytest==4.6.11
- python-json-logger==2.0.7
- python-libsbml==5.19.7
- rdkit-pypi==2022.9.5
- reframed==1.2.1
- rfc3986==1.5.0
- rich==13.3.1
- ruamel-yaml==0.17.21
- ruamel-yaml-clib==0.2.7
- scikit-learn==1.2.2
- scipy==1.10.1
- sqlalchemy==2.0.4
- statsmodels==0.13.5
- swiglpk==5.0.8
- tdqm==0.0.1
- tenacity==8.2.2
- testpath==0.6.0
- torch==2.0.0
- torchvision==0.15.1
- tqdm==4.64.1
prefix: /usr/local/Caskroom/miniforge/base/envs/tmcom