v3.0.0

Added

• Find shared DNA between an arbitrary number of individuals
• Return discrepant SNPs discovered while finding shared DNA
• Add support for VCF files

Updated

• Refactor lineage.snps as snps package
• Move Lineage.remap_snps to SNPs.remap_snps
• Output results of find_shared_dna as a dict
• Ensure types are consistent
• Update CSV header
• Update default for parallelize parameters

v2.0.0

Added

• Write files atomically
• Add support for MyHeritage files
• Parallelize remapping SNPs

Updated

• Refactor using inheritance
• Fix deprecations
• Utilize functional programming

v1.1.1

Updated

• Improve testing
• Re-structure library using cookiecutter-pylibrary

v1.1.0

Start versioning with Semantic Versioning.

Added

• Add support for FTDNA "famfinder" filetype
• Add SNP to detect_build

Updated

• Reformat code with Black
• Decrease margins on shared DNA plots

v1.0.3

Added

• Add ability to turn on / off all file output
• Add discrepant_snps property to Individual
• Add helper methods to SNPs class

Updated

• Return pandas.DataFrame objects from find_shared_dna
• Include assembly in filenames of output files
• Include header comments in all output files
• Update documentation

v1.0.2

Added

• Add ability to save discrepant SNPs after merging files
• Return paths to saved files

Updated

• Try HTTP version of URL if an FTP error occurred
• Use Matplotlib Agg backend
• Ensure expected behavior when no SNPs are loaded

v1.0.1

Added

• Extract comments when reading raw data files

Updated

• Parse data sources when reading lineage CSV file
• Update versioning and deployment to PyPI

v1.0

Added

• Add SNPs class
• Add summary properties to SNPs and Individual
• Incorporate HapMap PAR regions / find shared DNA in PAR regions
• Assign PAR SNPs to the X or Y chromosome
• Determine sex based on X and Y chromosome SNPs
• Cache assembly mapping data
• Add ability to download all resources
• Add header to output file generated when saving SNPs
• Add support for Python 3.7

Updated

• Improve processing of X chromosome / PAR regions
• Handle SNPs not remapped
• Return discrepant SNPs when loading files
• Pin requirements
• Update tests

v1.0b3

Added

• Add tests and integrate with Codecov
• Integrate with Read the Docs
• Add banner and badges

Updated

• Return results from various functions
• Fix some bugs

v1.0b2

Added

• Detect assembly of SNPs being loaded
• Automatically remap SNPs to Build 37 for processing (if necessary)

Updated

• Simplify the interface for remapping SNPs
• Use the The Versioneer for versioning

Removed

• Remove support for processing with Build 36 (remap SNPs to Build 37 instead)