Updating anvil-edge README for edge-25-01-15-18-17-1

reports/anvil-edge/tool-tests/chunks.json

@@ -28,11 +28,11 @@
         "date2": "Wed Jan 08 06:28:01 2025"
     },
     "5": {
-        "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-08-18-18-1/results.html",
-        "date1": "Wed Jan 08 18:33:59 2025",
-        "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-08-18-18-1/tools.yml",
-        "run2": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-01-18-17-1/results.html",
-        "date2": "Wed Jan 01 18:33:00 2025"
+        "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/results.html",
+        "date1": "Wed Jan 15 18:33:49 2025",
+        "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/tools.yml",
+        "run2": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-08-18-18-1/results.html",
+        "date2": "Wed Jan 08 18:33:59 2025"
     },
     "6": {
         "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-09-06-11-1/results.html",

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/chunk.json

@@ -0,0 +1,7 @@
+{
+    "5": {
+        "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/results.html",
+        "date1": "Wed Jan 15 18:33:49 2025",
+        "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/tools.yml"
+    }
+}

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/chunk.txt

@@ -0,0 +1,25 @@
+-t collapse_collections --tool-version 90981f86000f
+-t deeptools_multi_bam_summary --tool-version 78f405266706
+-t fastq_paired_end_deinterlacer --tool-version f3936d0632cb
+-t circos --tool-version df7356989ac1
+-t mummer_mummer --tool-version 48823c9635a4
+-t porechop --tool-version 93d623d9979c
+-t limma_voom --tool-version 0921444c832d
+-t limma_voom --tool-version d6f5fa4ee473
+-t sam2interval --tool-version 75557c0908a9
+-t samtools_flagstat --tool-version 22970df7a40e
+-t music_construct_eset --tool-version 282819d09a4f
+-t music_construct_eset --tool-version 2cfd0db49bbc
+-t raceid_clustering --tool-version a4b734cd253b
+-t raceid_clustering --tool-version f911a64454fb
+-t scanpy_filter --tool-version b409c2486353
+-t scanpy_normalise_data --tool-version 439f7f939d46
+-t scanpy_normalise_data --tool-version 463d4fa8f5ec
+-t annotatemyids --tool-version 44018dd6b447
+-t annotatemyids --tool-version fe3ca740a485
+-t diff --tool-version 156d0908e232
+-t bcftools_consensus --tool-version d6dc477167f8
+-t bcftools_plugin_impute_info --tool-version 776ad0b21536
+-t bcftools_query --tool-version c9c5718edc19
+-t vcfgeno2haplo --tool-version a3dea556218d
+-t ivar_trim --tool-version db536ad45f28

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/errors/1c23ee5e9a61f75c.json

@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "1c23ee5e9a61f75c",
+    "history_id": "88a764edcc385ade",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2025-01-15T18:40:04.643031",
+    "update_time": "2025-01-15T18:40:16.698814",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-vwczv",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/18/registry.xml' '/galaxy/server/database/jobs_directory/000/18/upload_params.json' '32:/galaxy/server/database/objects/b/d/9/dataset_bd950e63-4cb9-4536-b99b-c34ce8512327_files:/galaxy/server/database/objects/b/d/9/dataset_bd950e63-4cb9-4536-b99b-c34ce8512327.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params_jyw20hxe\"",
+        "files_metadata": "{\"__current_case__\": 708, \"file_type\": \"auto\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"tiles.bed\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_4q921crm\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"auto\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "1bb40bd7012c07b8",
+            "src": "hda",
+            "uuid": "bd950e63-4cb9-4536-b99b-c34ce8512327"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/errors/55ada890a7b90beb.json

@@ -0,0 +1,59 @@
+{
+    "model_class": "Job",
+    "id": "55ada890a7b90beb",
+    "history_id": "88a764edcc385ade",
+    "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.4.3+galaxy0",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2025-01-15T19:49:16.361886",
+    "update_time": "2025-01-15T19:49:20.867689",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-2zvvn",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "cp '/galaxy/server/database/objects/a/9/6/dataset_a961e805-c85f-4471-bebc-2e31ec63140a.dat' bed.bed && python '/cvmfs/cloud.galaxyproject.org/tools/toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/a250929be21b/ivar_trim/sanitize_bed.py' bed.bed && ln -s '/galaxy/server/database/objects/d/a/1/dataset_da10e1f3-2d6b-4f18-a388-7c5ebbada5de.dat' sorted.bam && ln -s '/galaxy/server/database/objects/_metadata_files/8/6/f/metadata_86f601a1-31cc-435b-8569-ca103ef33f3c.dat' sorted.bam.bai &&  ivar trim -i sorted.bam -b bed.bed -x 0  -m 30 -q 20 -s 4 | samtools sort -@ ${GALAXY_SLOTS:-1} -T \"${TMPDIR:-.}\" -o trimmed.sorted.bam -",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "__input_ext": "\"input\"",
+        "dbkey": "\"?\"",
+        "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"",
+        "trimmed_length": "{\"__current_case__\": 2, \"filter\": \"custom\", \"min_len\": \"30\"}",
+        "window_width": "\"4\"",
+        "min_qual": "\"20\"",
+        "inc_primers": "false",
+        "primer_pos_wiggle": "\"0\"",
+        "amplicons": "{\"__current_case__\": 2, \"filter_by\": \"\"}",
+        "primer": "{\"__current_case__\": 0, \"input_bed\": {\"values\": [{\"id\": 313, \"src\": \"hda\"}]}, \"source\": \"history\"}"
+    },
+    "inputs": {
+        "input_bam": {
+            "id": "f3cf2d3f852f0d01",
+            "src": "hda",
+            "uuid": "da10e1f3-2d6b-4f18-a388-7c5ebbada5de"
+        },
+        "primer|input_bed": {
+            "id": "241a75d2667a9de1",
+            "src": "hda",
+            "uuid": "a961e805-c85f-4471-bebc-2e31ec63140a"
+        }
+    },
+    "outputs": {
+        "output_bam": {
+            "id": "f541db37608f50b8",
+            "src": "hda",
+            "uuid": "83c0ebf8-4563-47e5-8f03-806b4c7250d7"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "Found 68 primers in BED file\nReading from sorted.bam\n\n-------\nResults: \nPrimer Name\tRead Count\n400_1_out_R\t116\n400_2_out_L\t265\n400_2_out_R\t269\n400_3_out_L*\t47\n400_3_out_R*\t55\n400_4_out_L\t123\n400_4_out_R\t123\n400_5_out_L\t1083\n400_5_out_R\t1044\n400_6_out_L\t139\n400_6_out_R\t140\n400_7_out_L\t246\n400_7_out_R\t251\n400_8_out_L*\t164\n400_8_out_R*\t164\n400_9_out_L*\t105\n400_9_out_R*\t104\n400_10_out_L\t358\n400_10_out_R\t358\n400_11_out_L\t1538\n400_11_out_R\t1541\n400_12_out_L\t297\n400_12_out_R\t293\n400_13_out_L\t209\n400_13_out_R\t229\n400_14_out_L*\t736\n400_14_out_R*\t735\n400_15_out_L\t87\n400_15_out_R\t82\n400_16_out_L*\t498\n400_16_out_R*\t493\n400_17_out_L**\t1420\n400_17_out_R**\t1415\n400_18_out_L**\t9\n400_18_out_R**\t9\n400_19_out_L\t43\n400_19_out_R\t50\n400_20_out_L*\t2128\n400_20_out_R*\t2158\n400_21_out_L*\t18\n400_21_out_R*\t10\n400_22_out_L**\t33\n400_22_out_R**\t5\n400_23_out_L\t179\n400_23_out_R\t169\n400_24_out_L**\t80\n400_24_out_R**\t80\n400_25_out_L**\t3035\n400_25_out_R**\t3073\n400_26_out_L\t423\n400_26_out_R\t428\n400_27_out_L\t104\n400_27_out_R\t6\n400_28_out_L\t41\n400_28_out_R\t43\n400_29_out_L\t113\n400_29_out_R\t118\n400_30_out_L\t1057\n400_30_out_R\t1054\n400_31_out_L\t166\n400_31_out_R\t170\n400_32_out_L\t280\n400_32_out_R\t283\n400_33_out_L*\t436\n400_33_out_R*\t433\n400_34_out_L*\t688\n400_34_out_R*\t688\n400_35_out_L\t0\n\nTrimmed primers from 99.24% (32302) of reads.\n10.73% (3493) of reads were quality trimmed below the minimum length of 30 bp and were not written to file.\n0.65% (212) of reads that started outside of primer regions were not written to file\n0.91% (296) of reads had their insert size smaller than their read length\n[bam_sort_core] merging from 0 files and 8 in-memory blocks...\n",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "Found 68 primers in BED file\nReading from sorted.bam\n\n-------\nResults: \nPrimer Name\tRead Count\n400_1_out_R\t116\n400_2_out_L\t265\n400_2_out_R\t269\n400_3_out_L*\t47\n400_3_out_R*\t55\n400_4_out_L\t123\n400_4_out_R\t123\n400_5_out_L\t1083\n400_5_out_R\t1044\n400_6_out_L\t139\n400_6_out_R\t140\n400_7_out_L\t246\n400_7_out_R\t251\n400_8_out_L*\t164\n400_8_out_R*\t164\n400_9_out_L*\t105\n400_9_out_R*\t104\n400_10_out_L\t358\n400_10_out_R\t358\n400_11_out_L\t1538\n400_11_out_R\t1541\n400_12_out_L\t297\n400_12_out_R\t293\n400_13_out_L\t209\n400_13_out_R\t229\n400_14_out_L*\t736\n400_14_out_R*\t735\n400_15_out_L\t87\n400_15_out_R\t82\n400_16_out_L*\t498\n400_16_out_R*\t493\n400_17_out_L**\t1420\n400_17_out_R**\t1415\n400_18_out_L**\t9\n400_18_out_R**\t9\n400_19_out_L\t43\n400_19_out_R\t50\n400_20_out_L*\t2128\n400_20_out_R*\t2158\n400_21_out_L*\t18\n400_21_out_R*\t10\n400_22_out_L**\t33\n400_22_out_R**\t5\n400_23_out_L\t179\n400_23_out_R\t169\n400_24_out_L**\t80\n400_24_out_R**\t80\n400_25_out_L**\t3035\n400_25_out_R**\t3073\n400_26_out_L\t423\n400_26_out_R\t428\n400_27_out_L\t104\n400_27_out_R\t6\n400_28_out_L\t41\n400_28_out_R\t43\n400_29_out_L\t113\n400_29_out_R\t118\n400_30_out_L\t1057\n400_30_out_R\t1054\n400_31_out_L\t166\n400_31_out_R\t170\n400_32_out_L\t280\n400_32_out_R\t283\n400_33_out_L*\t436\n400_33_out_R*\t433\n400_34_out_L*\t688\n400_34_out_R*\t688\n400_35_out_L\t0\n\nTrimmed primers from 99.24% (32302) of reads.\n10.73% (3493) of reads were quality trimmed below the minimum length of 30 bp and were not written to file.\n0.65% (212) of reads that started outside of primer regions were not written to file\n0.91% (296) of reads had their insert size smaller than their read length\n[bam_sort_core] merging from 0 files and 8 in-memory blocks...\n",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/errors/5ecc617fba1e1381.json

@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "5ecc617fba1e1381",
+    "history_id": "88a764edcc385ade",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2025-01-15T18:56:22.604066",
+    "update_time": "2025-01-15T18:56:34.494530",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-f4xn6",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/74/registry.xml' '/galaxy/server/database/jobs_directory/000/74/upload_params.json' '108:/galaxy/server/database/objects/2/1/f/dataset_21f1ed3a-0ea9-48ac-a267-2f9171eb0c1b_files:/galaxy/server/database/objects/2/1/f/dataset_21f1ed3a-0ea9-48ac-a267-2f9171eb0c1b.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params_okw2wfgu\"",
+        "files_metadata": "{\"__current_case__\": 708, \"file_type\": \"auto\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"matrix.txt\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_34gko0wc\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"auto\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "6c9860a816476cbf",
+            "src": "hda",
+            "uuid": "21f1ed3a-0ea9-48ac-a267-2f9171eb0c1b"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/errors/64b80abde379ec6f.json

@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "64b80abde379ec6f",
+    "history_id": "88a764edcc385ade",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2025-01-15T18:50:44.624556",
+    "update_time": "2025-01-15T18:51:35.782837",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-k566l",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/53/registry.xml' '/galaxy/server/database/jobs_directory/000/53/upload_params.json' '78:/galaxy/server/database/objects/a/c/a/dataset_aca0399e-59bb-4cab-9ea2-da75ba5feb5b_files:/galaxy/server/database/objects/a/c/a/dataset_aca0399e-59bb-4cab-9ea2-da75ba5feb5b.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params_8qc4e_2q\"",
+        "files_metadata": "{\"__current_case__\": 708, \"file_type\": \"auto\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"Mut3.counts\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_xttbhlzn\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"auto\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "60db0d6c4ecb1112",
+            "src": "hda",
+            "uuid": "aca0399e-59bb-4cab-9ea2-da75ba5feb5b"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/errors/7301365124a640a3.json

@@ -0,0 +1,62 @@
+{
+    "model_class": "Job",
+    "id": "7301365124a640a3",
+    "history_id": "88a764edcc385ade",
+    "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_deinterlacer/fastq_paired_end_deinterlacer/1.1.5+galaxy2",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2025-01-15T18:38:10.715702",
+    "update_time": "2025-01-15T18:38:16.595310",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-5vdch",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "gx-fastq-paired-end-deinterlacer '/galaxy/server/database/objects/6/8/0/dataset_680abe3d-66f3-4af0-9fc2-699bb5fe3501.dat' 'sanger.gz' '/galaxy/server/database/objects/f/1/a/dataset_f1ac8420-d2d1-4bbc-a2b6-d6dc6c361b29.dat' '/galaxy/server/database/objects/d/4/8/dataset_d488459e-daa7-44b0-93a5-7c437de601bb.dat' '/galaxy/server/database/objects/1/e/e/dataset_1ee2c478-c12d-452e-be64-5f790d2ea928.dat' '/galaxy/server/database/objects/3/0/6/dataset_306e8921-4556-445a-9d58-3be9f179c718.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "__input_ext": "\"input\"",
+        "dbkey": "\"?\"",
+        "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\""
+    },
+    "inputs": {
+        "input_file": {
+            "id": "d5396f9937e229f3",
+            "src": "hda",
+            "uuid": "680abe3d-66f3-4af0-9fc2-699bb5fe3501"
+        }
+    },
+    "outputs": {
+        "output1_pairs_file": {
+            "id": "4d28e1cbcf0d247d",
+            "src": "hda",
+            "uuid": "f1ac8420-d2d1-4bbc-a2b6-d6dc6c361b29"
+        },
+        "output2_pairs_file": {
+            "id": "1c23ee5e9a61f75c",
+            "src": "hda",
+            "uuid": "d488459e-daa7-44b0-93a5-7c437de601bb"
+        },
+        "output1_singles_file": {
+            "id": "1aa1cefaa055a114",
+            "src": "hda",
+            "uuid": "1ee2c478-c12d-452e-be64-5f790d2ea928"
+        },
+        "output2_singles_file": {
+            "id": "f3b4d99e762b9a98",
+            "src": "hda",
+            "uuid": "306e8921-4556-445a-9d58-3be9f179c718"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "There were 2 reads with no mate.\nDe-interlaced 4.0 pairs of sequences.\n",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "There were 2 reads with no mate.\nDe-interlaced 4.0 pairs of sequences.\n",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}

reports/anvil-edge/tool-tests/edge-25-01-15-18-17-1/errors/8c20bc968b6a70c6.json

@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "8c20bc968b6a70c6",
+    "history_id": "88a764edcc385ade",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2025-01-15T19:40:02.025864",
+    "update_time": "2025-01-15T19:40:12.748582",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-lqb4r",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/181/registry.xml' '/galaxy/server/database/jobs_directory/000/181/upload_params.json' '269:/galaxy/server/database/objects/b/c/4/dataset_bc477009-2332-407c-891a-dacc50d192dc_files:/galaxy/server/database/objects/b/c/4/dataset_bc477009-2332-407c-891a-dacc50d192dc.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params_juvxmteu\"",
+        "files_metadata": "{\"__current_case__\": 708, \"file_type\": \"auto\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"file1.txt\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_b3sai19i\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"auto\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "ba490cf4c8a9b667",
+            "src": "hda",
+            "uuid": "bc477009-2332-407c-891a-dacc50d192dc"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}