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Updating anvil-edge README for edge-23-10-24-18-13-1
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7 changes: 7 additions & 0 deletions
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reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/chunk.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| { | ||
| "3": { | ||
| "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/results.html", | ||
| "date1": "Tue Oct 24 18:30:54 2023", | ||
| "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/tools.yml" | ||
| } | ||
| } |
25 changes: 25 additions & 0 deletions
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reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/chunk.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| -t racon --tool-version a199cd7ac344 | ||
| -t deeptools_compute_gc_bias --tool-version 2bc10a9ca58b | ||
| -t fastq_manipulation --tool-version 5b87038565bb | ||
| -t ncbi_acc_download --tool-version 1c58de56d587 | ||
| -t mummer_show_coords --tool-version 959c1f8dae95 | ||
| -t poretools_squiggle --tool-version 34553d0caa5e | ||
| -t kallisto_quant --tool-version 60f888039fb2 | ||
| -t bamtools --tool-version 4d343c1f606b | ||
| -t samtools_idxstats --tool-version 7a6034296ae9 | ||
| -t samtools_idxstats --tool-version 7def34e6cf4d | ||
| -t music_inspect_eset --tool-version 2fed32b5aa02 | ||
| -t music_inspect_eset --tool-version 7705cc75ac18 | ||
| -t raceid_inspectclusters --tool-version 2b0d3e2f402a | ||
| -t raceid_inspectclusters --tool-version 41f34e925bd5 | ||
| -t scater_plot_pca --tool-version 46fc6751d746 | ||
| -t scater_plot_pca --tool-version c99ba278dfa9 | ||
| -t scanpy_filter_cells --tool-version 4c42e5d8cb7c | ||
| -t scanpy_filter_cells --tool-version ba64b91ed2b9 | ||
| -t column_maker --tool-version 02026300aa45 | ||
| -t column_order_header_sort --tool-version 6ae9724caf4d | ||
| -t sniffles --tool-version 93c4b04a0769 | ||
| -t bcftools_concat --tool-version d40d4bf05718 | ||
| -t bcftools_annotate --tool-version 403553ae19f6 | ||
| -t vcffixup --tool-version 11f62f071125 | ||
| -t vcftools_annotate --tool-version 57a6550df582 |
97 changes: 97 additions & 0 deletions
97
reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/errors/11f10f91ff4f160b.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,97 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "11f10f91ff4f160b", | ||
| "state": "error", | ||
| "exit_code": 1, | ||
| "update_time": "2023-10-24T18:47:22.553600", | ||
| "create_time": "2023-10-24T18:47:06.070631", | ||
| "galaxy_version": "23.1", | ||
| "command_version": "", | ||
| "copied_from_job_id": null, | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.5+galaxy0", | ||
| "history_id": "ac0b688889bc6865", | ||
| "external_id": "gxy-fzxjc", | ||
| "command_line": "echo 'CP011064,CP0XXXXX,CP021680' | sed -r 's/(\\,|__cn__)/\\n/g' | grep -v \"^[ \\t]*$\" > accessions && mkdir outdir && cd outdir && ignore_errors=0 && while read accession; do echo \"Downloading accession number: \" $accession \" ...\" >> ../error.log && ncbi-acc-download --molecule 'nucleotide' --format 'fasta' --extended-validation all ${accession}; failure=$?; if [ $failure -ne 0 ]; then echo \" failed.\" >> ../error.log; if [ $ignore_errors -ne 0 ]; then echo $accession >> ../failed.txt; else exit 1; fi; else echo \" done.\" >> ../error.log; fi; sleep 2; done < ../accessions 2> >(tee -a ../error.log >&2);", | ||
| "traceback": null, | ||
| "params": { | ||
| "__input_ext": "\"data\"", | ||
| "dbkey": "\"?\"", | ||
| "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"", | ||
| "ignore_failed": "\"0\"", | ||
| "molecule": "{\"__current_case__\": 0, \"format\": \"fasta\", \"select\": \"nucleotide\"}", | ||
| "query_source": "{\"__current_case__\": 1, \"accession_list\": \"CP011064,CP0XXXXX,CP021680\", \"select\": \"accession_list\"}" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "error_log": { | ||
| "id": "799d0bfb7f1bdb54", | ||
| "src": "hda", | ||
| "uuid": "d1c94233-5843-4d39-a5a8-6f74648f9e7c" | ||
| }, | ||
| "__new_primary_file_output|CP011064__": { | ||
| "id": "5b2f017fabdab700", | ||
| "src": "hda", | ||
| "uuid": "43f58e33-fab1-49ac-a8e6-09d650c448ba" | ||
| } | ||
| }, | ||
| "output_collections": { | ||
| "output": { | ||
| "id": "b9bef7d910419ef5", | ||
| "src": "hdca" | ||
| } | ||
| }, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "Failed to download file with id CP0XXXXX from NCBI\nTraceback (most recent call last):\n File \"/usr/local/bin/ncbi-acc-download\", line 10, in <module>\n sys.exit(main())\n File \"/usr/local/lib/python3.8/site-packages/ncbi_acc_download/__main__.py\", line 54, in main\n download_to_file(dl_id, config, filename, append)\n File \"/usr/local/lib/python3.8/site-packages/ncbi_acc_download/core.py\", line 110, in download_to_file\n r = get_stream(url, params)\n File \"/usr/local/lib/python3.8/site-packages/ncbi_acc_download/download.py\", line 90, in get_stream\n raise DownloadError(\"Download failed with return code: {}\".format(r.status_code))\nncbi_acc_download.errors.DownloadError: Download failed with return code: 400\n", | ||
| "job_stdout": "", | ||
| "job_stderr": "", | ||
| "stderr": "Failed to download file with id CP0XXXXX from NCBI\nTraceback (most recent call last):\n File \"/usr/local/bin/ncbi-acc-download\", line 10, in <module>\n sys.exit(main())\n File \"/usr/local/lib/python3.8/site-packages/ncbi_acc_download/__main__.py\", line 54, in main\n download_to_file(dl_id, config, filename, append)\n File \"/usr/local/lib/python3.8/site-packages/ncbi_acc_download/core.py\", line 110, in download_to_file\n r = get_stream(url, params)\n File \"/usr/local/lib/python3.8/site-packages/ncbi_acc_download/download.py\", line 90, in get_stream\n raise DownloadError(\"Download failed with return code: {}\".format(r.status_code))\nncbi_acc_download.errors.DownloadError: Download failed with return code: 400\n", | ||
| "stdout": "", | ||
| "job_messages": [ | ||
| { | ||
| "code_desc": "", | ||
| "desc": "Fatal error: Exit code 1 ()", | ||
| "error_level": 3, | ||
| "exit_code": 1, | ||
| "type": "exit_code" | ||
| } | ||
| ], | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [ | ||
| { | ||
| "title": "Job Runtime (Wall Clock)", | ||
| "value": "3 seconds", | ||
| "plugin": "core", | ||
| "name": "runtime_seconds", | ||
| "raw_value": "3.0000000" | ||
| }, | ||
| { | ||
| "title": "Job End Time", | ||
| "value": "2023-10-24 18:47:11", | ||
| "plugin": "core", | ||
| "name": "end_epoch", | ||
| "raw_value": "1698173231.0000000" | ||
| }, | ||
| { | ||
| "title": "Job Start Time", | ||
| "value": "2023-10-24 18:47:08", | ||
| "plugin": "core", | ||
| "name": "start_epoch", | ||
| "raw_value": "1698173228.0000000" | ||
| }, | ||
| { | ||
| "title": "Memory Allocated (MB)", | ||
| "value": "4080", | ||
| "plugin": "core", | ||
| "name": "galaxy_memory_mb", | ||
| "raw_value": "4080.0000000" | ||
| }, | ||
| { | ||
| "title": "Cores Allocated", | ||
| "value": "1", | ||
| "plugin": "core", | ||
| "name": "galaxy_slots", | ||
| "raw_value": "1.0000000" | ||
| } | ||
| ] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/errors/1486d3c4f6725a5b.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "1486d3c4f6725a5b", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-24T18:53:35.706032", | ||
| "create_time": "2023-10-24T18:53:24.154809", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "ac0b688889bc6865", | ||
| "external_id": "gxy-l7l4s", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/77/registry.xml' '/galaxy/server/database/jobs_directory/000/77/upload_params.json' '107:/galaxy/server/database/objects/4/5/0/dataset_4504cc8b-b39e-4ad6-ba82-2eeaad435b1e_files:/galaxy/server/database/objects/4/5/0/dataset_4504cc8b-b39e-4ad6-ba82-2eeaad435b1e.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_3v9luuae\"", | ||
| "files_metadata": "{\"__current_case__\": 75, \"file_type\": \"fasta\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"felCat8_chrM.fa\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_9hjsh3fu\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"fasta\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "d3e8c30c887d1fc7", | ||
| "src": "hda", | ||
| "uuid": "4504cc8b-b39e-4ad6-ba82-2eeaad435b1e" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/errors/2690ce60900b8d77.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "2690ce60900b8d77", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-24T19:24:04.441693", | ||
| "create_time": "2023-10-24T19:23:53.497876", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "ac0b688889bc6865", | ||
| "external_id": "gxy-w6njw", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/192/registry.xml' '/galaxy/server/database/jobs_directory/000/192/upload_params.json' '236:/galaxy/server/database/objects/c/1/8/dataset_c18af32b-a766-400a-813e-a0ad98d99cfe_files:/galaxy/server/database/objects/c/1/8/dataset_c18af32b-a766-400a-813e-a0ad98d99cfe.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_begkxmpz\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"test_in1.vcf\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_j87c0pbv\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "011140a76a787afb", | ||
| "src": "hda", | ||
| "uuid": "c18af32b-a766-400a-813e-a0ad98d99cfe" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
55 changes: 55 additions & 0 deletions
55
reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/errors/33095ef16140ba3b.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "33095ef16140ba3b", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-24T19:09:37.249706", | ||
| "create_time": "2023-10-24T19:09:26.576999", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/0.2.3+galaxy2", | ||
| "history_id": "ac0b688889bc6865", | ||
| "external_id": "gxy-qwhdv", | ||
| "command_line": "Rscript '/cvmfs/cloud.galaxyproject.org/tools/toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/2b0d3e2f402a/raceid_inspectclusters/scripts/clusterinspect.R' '/galaxy/server/database/jobs_directory/000/133/configs/tmp4khvbq8s' &> '/galaxy/server/database/objects/a/8/f/dataset_a8f48fd2-533f-473f-82ec-9f4456d0ed85.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "__input_ext": "\"input\"", | ||
| "dbkey": "\"?\"", | ||
| "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"", | ||
| "diffgtest": "{\"__current_case__\": 1, \"do_opt\": \"yes\", \"set_a\": {\"meth\": {\"__current_case__\": 1, \"selector\": \"^V5.*\", \"type\": \"regex\"}, \"name_set\": \"Test set A\"}, \"set_b\": {\"meth\": {\"__current_case__\": 2, \"selector\": \"I5d_3,I5d_4,I5d_6,I5d_8,I5d_9,I5d_10,I5d_11,I5d_12,I5d_13,I5d_14\", \"type\": \"manual\"}, \"name_set\": \"Test set B\"}, \"use\": {\"__current_case__\": 1, \"def\": \"no\", \"plotdiffg_lthr\": \"0.2\", \"plotdiffg_mthr\": \"0.2\", \"plotdiffg_padj\": false, \"plotdiffg_pthr\": \"0.1\", \"plotdiffg_show_names\": true}}", | ||
| "gois": "{\"__current_case__\": 1, \"do_opt\": \"yes\", \"inspect_goi_cells\": null, \"inspect_goi_genes\": \"Apoa1,Apoa1bp,Apoa2,Apoa4,Apoa5\", \"use\": {\"__current_case__\": 1, \"def\": \"no\", \"inspect_goi_imputed\": false, \"plotexp_n\": \"Test Title\", \"plotmarkg_aggr\": true, \"plotmarkg_cap\": \"100\", \"plotmarkg_cl\": null, \"plotmarkg_cluster_cols\": true, \"plotmarkg_cluster_rows\": false, \"plotmarkg_cluster_set\": true, \"plotmarkg_cthr\": \"0\", \"plotmarkg_flo\": \"-10\", \"plotmarkg_norm\": true, \"plotmarkg_order_cells\": true, \"plotmarkg_samples\": \"(\\\\\\\\_\\\\\\\\d+)$\"}}", | ||
| "plotsym": "{\"__current_case__\": 1, \"do_opt\": \"yes\", \"types_regex\": \"\\\\\\\\_\\\\\\\\d+\", \"use\": {\"__current_case__\": 1, \"def\": \"no\", \"fr\": true, \"subset_regex\": \"IV|V\"}}", | ||
| "plotgen": "{\"__current_case__\": 1, \"clusts_plot\": \"\", \"do_opt\": \"yes\"}" | ||
| }, | ||
| "inputs": { | ||
| "inputrds": { | ||
| "id": "2e89c0b970036ba9", | ||
| "src": "hda", | ||
| "uuid": "842c1525-6ebf-4559-bd46-16caed4a95f8" | ||
| } | ||
| }, | ||
| "outputs": { | ||
| "outpdf": { | ||
| "id": "e9d99367ce35acfe", | ||
| "src": "hda", | ||
| "uuid": "dcba375e-59ac-4849-ab60-ff553839c112" | ||
| }, | ||
| "outlog": { | ||
| "id": "86714f837e34f213", | ||
| "src": "hda", | ||
| "uuid": "a8f48fd2-533f-473f-82ec-9f4456d0ed85" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
48 changes: 48 additions & 0 deletions
48
reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/errors/3bcef82d73bbd8f0.json
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Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,48 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "3bcef82d73bbd8f0", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-24T18:40:04.723226", | ||
| "create_time": "2023-10-24T18:39:59.226366", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_manipulation/fastq_manipulation/1.1.5", | ||
| "history_id": "ac0b688889bc6865", | ||
| "external_id": "gxy-hdkkh", | ||
| "command_line": "gx-fastq-manipulation '/galaxy/server/database/objects/6/f/7/dataset_6f7cba4d-121a-4107-ac9e-567a1482f275.dat' '/galaxy/server/database/jobs_directory/000/29/configs/tmpgriatoc9' '/galaxy/server/database/objects/2/5/8/dataset_258c91ee-c266-47ab-a31f-d4aa013296ac.dat' '/galaxy/server/database/objects/2/5/8/dataset_258c91ee-c266-47ab-a31f-d4aa013296ac_files' 'sanger'", | ||
| "traceback": null, | ||
| "params": { | ||
| "__input_ext": "\"fastqsanger\"", | ||
| "dbkey": "\"?\"", | ||
| "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"", | ||
| "manipulate_blocks": "[{\"__index__\": 0, \"manipulation_type\": {\"__current_case__\": 1, \"manipulation\": {\"__current_case__\": 0, \"manipulation_selector\": \"rev_comp\"}, \"manipulation_type_selector\": \"sequence\"}}]", | ||
| "match_blocks": "[{\"__index__\": 0, \"match_type\": {\"__current_case__\": 0, \"match\": {\"__current_case__\": 0, \"match_by\": \".*\", \"match_selector\": \"regex\"}, \"match_type_selector\": \"identifier\"}}]" | ||
| }, | ||
| "inputs": { | ||
| "input_file": { | ||
| "id": "1e677958130fdcaf", | ||
| "src": "hda", | ||
| "uuid": "6f7cba4d-121a-4107-ac9e-567a1482f275" | ||
| } | ||
| }, | ||
| "outputs": { | ||
| "output_file": { | ||
| "id": "3bcef82d73bbd8f0", | ||
| "src": "hda", | ||
| "uuid": "258c91ee-c266-47ab-a31f-d4aa013296ac" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
48 changes: 48 additions & 0 deletions
48
reports/anvil-edge/tool-tests/edge-23-10-24-18-13-1/errors/484110747c58a09b.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,48 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "484110747c58a09b", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-24T18:37:06.142967", | ||
| "create_time": "2023-10-24T18:37:00.383017", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_manipulation/fastq_manipulation/1.1.5", | ||
| "history_id": "ac0b688889bc6865", | ||
| "external_id": "gxy-8c8df", | ||
| "command_line": "gx-fastq-manipulation '/galaxy/server/database/objects/b/0/e/dataset_b0e2b989-466e-4a2f-8612-3fbda3058871.dat' '/galaxy/server/database/jobs_directory/000/17/configs/tmpzkdy89eg' '/galaxy/server/database/objects/7/c/f/dataset_7cf228fc-dd52-413e-822f-b9d8c313aa79.dat' '/galaxy/server/database/objects/7/c/f/dataset_7cf228fc-dd52-413e-822f-b9d8c313aa79_files' 'sanger'", | ||
| "traceback": null, | ||
| "params": { | ||
| "__input_ext": "\"fastqsanger\"", | ||
| "dbkey": "\"?\"", | ||
| "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"", | ||
| "manipulate_blocks": "[{\"__index__\": 0, \"manipulation_type\": {\"__current_case__\": 3, \"manipulation\": {\"__current_case__\": 0, \"manipulation_selector\": \"remove\"}, \"manipulation_type_selector\": \"miscellaneous\"}}]", | ||
| "match_blocks": "[{\"__index__\": 0, \"match_type\": {\"__current_case__\": 0, \"match\": {\"__current_case__\": 0, \"match_by\": \".*\", \"match_selector\": \"regex\"}, \"match_type_selector\": \"identifier\"}}]" | ||
| }, | ||
| "inputs": { | ||
| "input_file": { | ||
| "id": "b142ce6277d7bb01", | ||
| "src": "hda", | ||
| "uuid": "b0e2b989-466e-4a2f-8612-3fbda3058871" | ||
| } | ||
| }, | ||
| "outputs": { | ||
| "output_file": { | ||
| "id": "484110747c58a09b", | ||
| "src": "hda", | ||
| "uuid": "7cf228fc-dd52-413e-822f-b9d8c313aa79" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
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