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Updating anvil-production README for prod-24-12-30-00-37-1
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7 changes: 7 additions & 0 deletions
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reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/chunk.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| { | ||
| "0": { | ||
| "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/results.html", | ||
| "date1": "Mon Dec 30 00:52:50 2024", | ||
| "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/tools.yml" | ||
| } | ||
| } |
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reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/chunk.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| -t sra_tools --tool-version e08a7ad4378b | ||
| -t split_file_on_column --tool-version 37a53100b67e | ||
| -t fastq_filter --tool-version 81a9090d6df3 | ||
| -t samtools_view --tool-version b72793637686 | ||
| -t samtools_split --tool-version 135c85f4cfaf | ||
| -t sam_merge --tool-version 1977f1637890 | ||
| -t bcftools_concat --tool-version d40d4bf05718 | ||
| -t bcftools_annotate --tool-version 403553ae19f6 | ||
| -t vcffixup --tool-version 11f62f071125 | ||
| -t vcftools_annotate --tool-version 57a6550df582 | ||
| -t porechop --tool-version 93d623d9979c | ||
| -t deeptools_compute_gc_bias --tool-version 2bc10a9ca58b | ||
| -t bwa --tool-version 3fe632431b68 | ||
| -t snpsift_dbnsfp --tool-version 4e21e4f2bc48 | ||
| -t limma_voom --tool-version 0921444c832d | ||
| -t mummer_delta_filter --tool-version b3acbb3a6af0 |
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reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/errors/18d63872b3269485.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
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| "tool_id": "upload1", | ||
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| "external_id": "gxy-bw9r7", | ||
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| "stdout": "", | ||
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| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
47 changes: 47 additions & 0 deletions
47
reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/errors/196b84ddca54174e.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,47 @@ | ||
| { | ||
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| "external_id": "gxy-6hvzc", | ||
| "command_line": "addthreads=${GALAXY_SLOTS:-1} && (( addthreads-- )) && samtools split -f 'Read_Group_%!.bam' -u '/galaxy/server/database/objects/1/4/c/dataset_14cae4b9-035c-43dd-b791-7a371b5cb643.dat' -@ $addthreads '/galaxy/server/database/objects/1/6/c/dataset_16c65af2-71c6-444d-b73a-9dbe010b8b63.dat'", | ||
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44 changes: 44 additions & 0 deletions
44
reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/errors/1bc5c07b81485c83.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "1bc5c07b81485c83", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2024-12-30T00:59:01.349179", | ||
| "create_time": "2024-12-30T00:58:52.041724", | ||
| "galaxy_version": "23.1", | ||
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| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "1262154bdd2f9614", | ||
| "external_id": "gxy-r5c47", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/22/registry.xml' '/galaxy/server/database/jobs_directory/000/22/upload_params.json' '22:/galaxy/server/database/objects/b/6/f/dataset_b6f9f501-2b3c-44d2-893f-59e883837a99_files:/galaxy/server/database/objects/b/6/f/dataset_b6f9f501-2b3c-44d2-893f-59e883837a99.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_pfdgri5u\"", | ||
| "files_metadata": "{\"__current_case__\": 75, \"file_type\": \"fasta\"}", | ||
| "dbkey": "\"equCab2\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"chr_m.fasta\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_srjps2c_\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"fasta\"" | ||
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| "inputs": {}, | ||
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| "output0": { | ||
| "id": "1bc5c07b81485c83", | ||
| "src": "hda", | ||
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44 changes: 44 additions & 0 deletions
44
reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/errors/1e2ca038c6fae50b.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "1e2ca038c6fae50b", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2024-12-30T01:13:29.734171", | ||
| "create_time": "2024-12-30T01:13:21.747181", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
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| "tool_id": "upload1", | ||
| "history_id": "1262154bdd2f9614", | ||
| "external_id": "gxy-r69wd", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/96/registry.xml' '/galaxy/server/database/jobs_directory/000/96/upload_params.json' '96:/galaxy/server/database/objects/4/3/6/dataset_4362608b-2033-46e3-9f03-9ae4ab2a427f_files:/galaxy/server/database/objects/4/3/6/dataset_4362608b-2033-46e3-9f03-9ae4ab2a427f.dat'", | ||
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| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"concat.1.a.vcf\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_xe3n0iq7\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
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44 changes: 44 additions & 0 deletions
44
reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/errors/8d426062260e5599.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
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| "external_id": "gxy-7lk46", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/90/registry.xml' '/galaxy/server/database/jobs_directory/000/90/upload_params.json' '90:/galaxy/server/database/objects/c/1/1/dataset_c117bbb6-a4ec-4dc3-be7b-2cdf8c77d746_files:/galaxy/server/database/objects/c/1/1/dataset_c117bbb6-a4ec-4dc3-be7b-2cdf8c77d746.dat'", | ||
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44 changes: 44 additions & 0 deletions
44
reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/errors/9d9743b4b8ce0c75.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
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44 changes: 44 additions & 0 deletions
44
reports/anvil-production/tool-tests/prod-24-12-30-00-37-1/errors/bf46a3337c78fbae.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
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