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Updating anvil-edge README for edge-23-10-25-06-08-1
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7 changes: 7 additions & 0 deletions
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reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/chunk.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| { | ||
| "4": { | ||
| "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/results.html", | ||
| "date1": "Wed Oct 25 06:26:17 2023", | ||
| "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/tools.yml" | ||
| } | ||
| } |
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reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/chunk.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| -t bedtools --tool-version ce3c7f062223 | ||
| -t bedtools --tool-version 07e8b80f278c | ||
| -t deeptools_correct_gc_bias --tool-version 2c37ce318bc3 | ||
| -t fasta_compute_length --tool-version 7d37cfda8e00 | ||
| -t pygenometracks --tool-version 2824d77cd8f8 | ||
| -t mummer_dnadiff --tool-version 60698466facd | ||
| -t poretools_yield_plot --tool-version ca22d8497db5 | ||
| -t deseq2 --tool-version 6a3a025714d3 | ||
| -t bamtools_split --tool-version 9676127a1ed2 | ||
| -t samtool_filter2 --tool-version 649a225999a5 | ||
| -t music_deconvolution --tool-version 2ba99a52bd44 | ||
| -t raceid_filtnormconf --tool-version c891d8b33ede | ||
| -t raceid_filtnormconf --tool-version 43c146e25a43 | ||
| -t scanpy_cluster_reduce_dimension --tool-version aaa5da8e73a9 | ||
| -t scanpy_filter_genes --tool-version 7857ea93a011 | ||
| -t scanpy_filter_genes --tool-version a1698b43abeb | ||
| -t sqlite_to_tabular --tool-version bce29ec10b78 | ||
| -t replace_column_by_key_value_file --tool-version d533e4b75800 | ||
| -t jasminesv --tool-version 2b62154e39c8 | ||
| -t bcftools_convert_from_vcf --tool-version b8e9da766b0f | ||
| -t bcftools_plugin_dosage --tool-version 5c232a738c74 | ||
| -t vcfflatten --tool-version f285aa6bdcfb | ||
| -t vcftools_slice --tool-version 1363e5d4a8b8 |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/errors/0e4790427e36cdd6.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "0e4790427e36cdd6", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-25T06:43:48.751339", | ||
| "create_time": "2023-10-25T06:43:21.905919", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "f4d16b9957225bef", | ||
| "external_id": "gxy-rgwq6", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/85/registry.xml' '/galaxy/server/database/jobs_directory/000/85/upload_params.json' '97:/galaxy/server/database/objects/6/5/0/dataset_65009de8-7a9d-4f6c-9de1-f78afd8dc866_files:/galaxy/server/database/objects/6/5/0/dataset_65009de8-7a9d-4f6c-9de1-f78afd8dc866.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_hal7eg_7\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"sailfish_quant.sf5.tab\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_7lduv1_7\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "70aa2854520f4902", | ||
| "src": "hda", | ||
| "uuid": "65009de8-7a9d-4f6c-9de1-f78afd8dc866" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/errors/15fcb23e8e978cac.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "15fcb23e8e978cac", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-25T07:03:09.153762", | ||
| "create_time": "2023-10-25T07:02:51.621515", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "f4d16b9957225bef", | ||
| "external_id": "gxy-25sz2", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/150/registry.xml' '/galaxy/server/database/jobs_directory/000/150/upload_params.json' '220:/galaxy/server/database/objects/f/d/b/dataset_fdb817b7-84aa-44b9-8185-8a597adaebb5_files:/galaxy/server/database/objects/f/d/b/dataset_fdb817b7-84aa-44b9-8185-8a597adaebb5.dat'", | ||
| "traceback": "Traceback (most recent call last):\n File \"/galaxy/server/lib/galaxy/jobs/runners/__init__.py\", line 649, in _finish_or_resubmit_job\n job_wrapper.finish(\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1964, in finish\n self._finish_dataset(output_name, dataset, job, context, final_job_state, remote_metadata_directory)\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1781, in _finish_dataset\n dataset.datatype.set_meta(dataset, overwrite=False)\n File \"/galaxy/server/lib/galaxy/datatypes/binary.py\", line 1500, in set_meta\n if \"index\" in tmp:\nTypeError: Cannot compare structured or void to non-void arrays.\n", | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_v67uguqr\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_4g64_3o3\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "26037f58e6a30f3d", | ||
| "src": "hda", | ||
| "uuid": "fdb817b7-84aa-44b9-8185-8a597adaebb5" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": [], | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/errors/1cf3ebb935b7ab11.json
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Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "1cf3ebb935b7ab11", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-25T07:02:50.731152", | ||
| "create_time": "2023-10-25T07:02:31.602089", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "f4d16b9957225bef", | ||
| "external_id": "gxy-cpdz7", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/149/registry.xml' '/galaxy/server/database/jobs_directory/000/149/upload_params.json' '219:/galaxy/server/database/objects/5/9/a/dataset_59a02287-9613-4a6a-bf08-3959311fa251_files:/galaxy/server/database/objects/5/9/a/dataset_59a02287-9613-4a6a-bf08-3959311fa251.dat'", | ||
| "traceback": "Traceback (most recent call last):\n File \"/galaxy/server/lib/galaxy/jobs/runners/__init__.py\", line 649, in _finish_or_resubmit_job\n job_wrapper.finish(\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1964, in finish\n self._finish_dataset(output_name, dataset, job, context, final_job_state, remote_metadata_directory)\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1781, in _finish_dataset\n dataset.datatype.set_meta(dataset, overwrite=False)\n File \"/galaxy/server/lib/galaxy/datatypes/binary.py\", line 1500, in set_meta\n if \"index\" in tmp:\nTypeError: Cannot compare structured or void to non-void arrays.\n", | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_do1eq483\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_6db87fkk\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "a5a879e5e5632f0b", | ||
| "src": "hda", | ||
| "uuid": "59a02287-9613-4a6a-bf08-3959311fa251" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": [], | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/errors/29cb33cef681078c.json
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Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "29cb33cef681078c", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-25T07:01:51.760076", | ||
| "create_time": "2023-10-25T07:01:33.611792", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "f4d16b9957225bef", | ||
| "external_id": "gxy-v2565", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/146/registry.xml' '/galaxy/server/database/jobs_directory/000/146/upload_params.json' '216:/galaxy/server/database/objects/f/d/1/dataset_fd111247-4cef-4ccf-acaa-d2f3f631efd8_files:/galaxy/server/database/objects/f/d/1/dataset_fd111247-4cef-4ccf-acaa-d2f3f631efd8.dat'", | ||
| "traceback": "Traceback (most recent call last):\n File \"/galaxy/server/lib/galaxy/jobs/runners/__init__.py\", line 649, in _finish_or_resubmit_job\n job_wrapper.finish(\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1964, in finish\n self._finish_dataset(output_name, dataset, job, context, final_job_state, remote_metadata_directory)\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1781, in _finish_dataset\n dataset.datatype.set_meta(dataset, overwrite=False)\n File \"/galaxy/server/lib/galaxy/datatypes/binary.py\", line 1500, in set_meta\n if \"index\" in tmp:\nTypeError: Cannot compare structured or void to non-void arrays.\n", | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_b5zdescu\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_53vq8zea\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "d1af69e9daa98e41", | ||
| "src": "hda", | ||
| "uuid": "fd111247-4cef-4ccf-acaa-d2f3f631efd8" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": [], | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/errors/3614940b39948cc9.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "3614940b39948cc9", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-25T07:02:30.528222", | ||
| "create_time": "2023-10-25T07:02:12.259559", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "f4d16b9957225bef", | ||
| "external_id": "gxy-t68hq", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/148/registry.xml' '/galaxy/server/database/jobs_directory/000/148/upload_params.json' '218:/galaxy/server/database/objects/d/5/1/dataset_d513e4a9-6a5b-4b6d-9666-8e090f22838e_files:/galaxy/server/database/objects/d/5/1/dataset_d513e4a9-6a5b-4b6d-9666-8e090f22838e.dat'", | ||
| "traceback": "Traceback (most recent call last):\n File \"/galaxy/server/lib/galaxy/jobs/runners/__init__.py\", line 649, in _finish_or_resubmit_job\n job_wrapper.finish(\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1964, in finish\n self._finish_dataset(output_name, dataset, job, context, final_job_state, remote_metadata_directory)\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1781, in _finish_dataset\n dataset.datatype.set_meta(dataset, overwrite=False)\n File \"/galaxy/server/lib/galaxy/datatypes/binary.py\", line 1500, in set_meta\n if \"index\" in tmp:\nTypeError: Cannot compare structured or void to non-void arrays.\n", | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_3yrf480_\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_apao7t91\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "cad72e406e83d39f", | ||
| "src": "hda", | ||
| "uuid": "d513e4a9-6a5b-4b6d-9666-8e090f22838e" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": [], | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/errors/6947a0f7e65f9c2a.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "6947a0f7e65f9c2a", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-25T07:02:11.183313", | ||
| "create_time": "2023-10-25T07:01:52.331583", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "f4d16b9957225bef", | ||
| "external_id": "gxy-lz5vx", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/147/registry.xml' '/galaxy/server/database/jobs_directory/000/147/upload_params.json' '217:/galaxy/server/database/objects/9/7/e/dataset_97e8b389-7e5c-4f8c-92f6-12a681377196_files:/galaxy/server/database/objects/9/7/e/dataset_97e8b389-7e5c-4f8c-92f6-12a681377196.dat'", | ||
| "traceback": "Traceback (most recent call last):\n File \"/galaxy/server/lib/galaxy/jobs/runners/__init__.py\", line 649, in _finish_or_resubmit_job\n job_wrapper.finish(\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1964, in finish\n self._finish_dataset(output_name, dataset, job, context, final_job_state, remote_metadata_directory)\n File \"/galaxy/server/lib/galaxy/jobs/__init__.py\", line 1781, in _finish_dataset\n dataset.datatype.set_meta(dataset, overwrite=False)\n File \"/galaxy/server/lib/galaxy/datatypes/binary.py\", line 1500, in set_meta\n if \"index\" in tmp:\nTypeError: Cannot compare structured or void to non-void arrays.\n", | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_o2prco_z\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"krumsiek11.h5ad\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_pi6dr6vr\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "0079f75bbb39a210", | ||
| "src": "hda", | ||
| "uuid": "97e8b389-7e5c-4f8c-92f6-12a681377196" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": [], | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-edge/tool-tests/edge-23-10-25-06-08-1/errors/74ce522a41cb8c19.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "74ce522a41cb8c19", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2023-10-25T06:33:54.550541", | ||
| "create_time": "2023-10-25T06:33:31.709479", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "f4d16b9957225bef", | ||
| "external_id": "gxy-s29db", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/23/registry.xml' '/galaxy/server/database/jobs_directory/000/23/upload_params.json' '31:/galaxy/server/database/objects/a/1/e/dataset_a1e8d403-b60c-44ce-a11c-9ca157a121e2_files:/galaxy/server/database/objects/a/1/e/dataset_a1e8d403-b60c-44ce-a11c-9ca157a121e2.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_w0l_b34v\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"GSM461178_untreat_paired.counts\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_krs8lc1j\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "db817ac92368a4b3", | ||
| "src": "hda", | ||
| "uuid": "a1e8d403-b60c-44ce-a11c-9ca157a121e2" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
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