primed-dd.yaml

study_id: PRIMED_DD
study_accession:  
study_title: PRIMED GSR Data Model 
study_desc: Data model for Genomic Summary Results in the PRIMED consortium
url: https://primedconsortium.org/
identifier_prefix: https://primedconsortium.org/fhir
output_filename: primed
id_colname: subject_id
whistle_src: _cmg.wstl
study_sponsor:
  id: nih
  name: National Institutes of Health (NIH)
code_harmonization_dir: harmony/primed
require_official: True
curies:
  http://purl.obolibrary.org/obo/hp.owl: HP
  http://purl.obolibrary.org/obo/mondo.owl: MONDO
projector_lib: projector
env:
  local: dev
  dev: dev
  qa: google
  prod: google
dataset:
  analysis: 
    filename: None
    data_dictionary: 
      filename:  data/dd/primed_gsr_data_model/analysis.csv
      colnames:
        varname: variable_name
        desc: description
        type: data_type
        values: enumerations
    code_harmonization: harmony/primed/data-harmony.csv
  gsr_file: 
    filename: None
    data_dictionary: 
      filename:  data/dd/primed_gsr_data_model/gsr_file.csv
      colnames:
        varname: variable_name
        desc: description
        type: data_type
        values: enumerations
    code_harmonization: harmony/primed/data-harmony.csv
active_tables:
  ALL: true