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Pattern Recognition

Python and R codes used for the pattern recognition discipline @ USP using microarray RNA expression data obtained from breast cancer patients that had mutations in the BRACA1 or the BRACA2 genes.

Available codes for linearly separable binary classifications:

  • Linear Regression: Mean Square Error (MSE) classifier
  • Finding linearly separable gene pairs using linear programming constraint solvers
  • Support vector machines: Maximum margin
  • Support vector machines: Soft margin
  • Support vector machines: Soft margin with bolstered error estimation