-
Notifications
You must be signed in to change notification settings - Fork 1
/
features_rcrs.txt
923 lines (923 loc) · 43.3 KB
/
features_rcrs.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
FEATURES Location/Qualifiers
source 1..16569
/organism="Homo sapiens"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolation_source="caucasian"
/db_xref="taxon:9606"
/tissue_type="placenta"
/country="United Kingdom: Great Britain"
/note="this is the rCRS"
D-loop complement(join(16024..16569,1..576))
gene 577..647
/gene="TRNF"
/nomenclature="Official Symbol: MT-TF | Name:
mitochondrially encoded tRNA phenylalanine | Provided by:
HGNC:HGNC:7481"
/db_xref="GeneID:4558"
/db_xref="HGNC:HGNC:7481"
/db_xref="MIM:590070"
tRNA 577..647
/gene="TRNF"
/product="tRNA-Phe"
/note="NAR: 1455"
/anticodon=(pos:611..613,aa:Phe,seq:gaa)
/codon_recognized="UUC"
/db_xref="GeneID:4558"
/db_xref="HGNC:HGNC:7481"
/db_xref="MIM:590070"
gene 648..1601
/gene="RNR1"
/gene_synonym="MTRNR1"
/nomenclature="Official Symbol: MT-RNR1 | Name:
mitochondrially encoded 12S RNA | Provided by:
HGNC:HGNC:7470"
/db_xref="GeneID:4549"
/db_xref="HGNC:HGNC:7470"
/db_xref="MIM:561000"
rRNA 648..1601
/gene="RNR1"
/gene_synonym="MTRNR1"
/product="s-rRNA"
/note="12S rRNA; 12S ribosomal RNA"
/db_xref="GeneID:4549"
/db_xref="HGNC:HGNC:7470"
/db_xref="MIM:561000"
STS 1478..2187
/standard_name="PMC316374P5"
/db_xref="UniSTS:272966"
gene 1602..1670
/gene="TRNV"
/gene_synonym="MTTV"
/nomenclature="Official Symbol: MT-TV | Name:
mitochondrially encoded tRNA valine | Provided by:
HGNC:HGNC:7500"
/db_xref="GeneID:4577"
/db_xref="HGNC:HGNC:7500"
/db_xref="MIM:590105"
tRNA 1602..1670
/gene="TRNV"
/gene_synonym="MTTV"
/product="tRNA-Val"
/note="NAR: 2053"
/anticodon=(pos:1633..1635,aa:Val,seq:tac)
/codon_recognized="GUA"
/db_xref="GeneID:4577"
/db_xref="HGNC:HGNC:7500"
/db_xref="MIM:590105"
gene 1671..3229
/gene="RNR2"
/gene_synonym="MTRNR2"
/nomenclature="Official Symbol: MT-RNR2 | Name:
mitochondrially encoded 16S RNA | Provided by:
HGNC:HGNC:7471"
/db_xref="GeneID:4550"
/db_xref="HGNC:HGNC:7471"
/db_xref="MIM:561010"
rRNA 1671..3229
/gene="RNR2"
/gene_synonym="MTRNR2"
/product="l-rRNA"
/note="16S ribosomal RNA; 16S rRNA"
/db_xref="GeneID:4550"
/db_xref="HGNC:HGNC:7471"
/db_xref="MIM:561010"
STS 2062..2203
/gene="RNR2"
/gene_synonym="MTRNR2"
/standard_name="D3S2893E"
/db_xref="UniSTS:150884"
STS 2712..2884
/gene="RNR2"
/gene_synonym="MTRNR2"
/standard_name="NIB250"
/db_xref="UniSTS:56529"
STS 2806..2946
/gene="RNR2"
/gene_synonym="MTRNR2"
/standard_name="PMC31832P1"
/db_xref="UniSTS:273091"
misc_feature 3107
/note="preserves historical genome annotation numbering"
gene 3230..3304
/gene="TRNL1"
/gene_synonym="MTTL1"
/nomenclature="Official Symbol: MT-TL1 | Name:
mitochondrially encoded tRNA leucine 1 (UUA/G) | Provided
by: HGNC:HGNC:7490"
/db_xref="GeneID:4567"
/db_xref="HGNC:HGNC:7490"
/db_xref="MIM:590050"
tRNA 3230..3304
/gene="TRNL1"
/gene_synonym="MTTL1"
/product="tRNA-Leu"
/note="NAR: 1054"
/anticodon=(pos:3265..3267,aa:Leu,seq:taa)
/codon_recognized="UUR"
/db_xref="GeneID:4567"
/db_xref="HGNC:HGNC:7490"
/db_xref="MIM:590050"
gene 3307..4262
/gene="ND1"
/gene_synonym="MTND1"
/nomenclature="Official Symbol: MT-ND1 | Name:
mitochondrially encoded NADH dehydrogenase 1 | Provided
by: HGNC:HGNC:7455"
/db_xref="GeneID:4535"
/db_xref="HGNC:HGNC:7455"
/db_xref="MIM:516000"
CDS 3307..4262
/gene="ND1"
/gene_synonym="MTND1"
/note="NADH dehydrogenase, subunit 1 (complex I); TAA stop
codon is completed by the addition of 3' A residues to the
mRNA"
/codon_start=1
/transl_except=(pos:4261..4262,aa:TERM)
/transl_table=2
/product="NADH dehydrogenase subunit 1"
/protein_id="YP_003024026.1"
/db_xref="GeneID:4535"
/db_xref="HGNC:HGNC:7455"
/db_xref="MIM:516000"
/translation="MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYG
LLQPFADAMKLFTKEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGL
LFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSF
NLSTLITTQEHLWLLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAG
PFALFFMAEYTNIIMMNTLTTTIFLGTTYDALSPELYTTYFVTKTLLLTSLFLWIRTA
YPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT"
STS 3740..3834
/gene="ND1"
/gene_synonym="MTND1"
/standard_name="D17S1473E"
/db_xref="UniSTS:151680"
STS 4189..4813
/standard_name="PMC55343P1"
/db_xref="UniSTS:273322"
gene 4263..4331
/gene="TRNI"
/gene_synonym="MTTI"
/nomenclature="Official Symbol: MT-TI | Name:
mitochondrially encoded tRNA isoleucine | Provided by:
HGNC:HGNC:7488"
/db_xref="GeneID:4565"
/db_xref="HGNC:HGNC:7488"
/db_xref="MIM:590045"
tRNA 4263..4331
/gene="TRNI"
/gene_synonym="MTTI"
/product="tRNA-Ile"
/note="NAR: 0997"
/anticodon=(pos:4292..4294,aa:Ile,seq:gat)
/codon_recognized="AUC"
/db_xref="GeneID:4565"
/db_xref="HGNC:HGNC:7488"
/db_xref="MIM:590045"
gene complement(4329..4400)
/gene="TRNQ"
/gene_synonym="MTTQ"
/nomenclature="Official Symbol: MT-TQ | Name:
mitochondrially encoded tRNA glutamine | Provided by:
HGNC:HGNC:7495"
/db_xref="GeneID:4572"
/db_xref="HGNC:HGNC:7495"
/db_xref="MIM:590030"
tRNA complement(4329..4400)
/gene="TRNQ"
/gene_synonym="MTTQ"
/product="tRNA-Gln"
/note="NAR: 0597"
/anticodon=(pos:complement(4365..4367),aa:Gln,seq:ttg)
/codon_recognized="CAA"
/db_xref="GeneID:4572"
/db_xref="HGNC:HGNC:7495"
/db_xref="MIM:590030"
gene 4402..4469
/gene="TRNM"
/gene_synonym="MTTM"
/nomenclature="Official Symbol: MT-TM | Name:
mitochondrially encoded tRNA methionine | Provided by:
HGNC:HGNC:7492"
/db_xref="GeneID:4569"
/db_xref="HGNC:HGNC:7492"
/db_xref="MIM:590065"
tRNA 4402..4469
/gene="TRNM"
/gene_synonym="MTTM"
/product="tRNA-Met"
/note="NAR: 1297"
/anticodon=(pos:4432..4434,aa:Met,seq:cat)
/codon_recognized="AUG"
/db_xref="GeneID:4569"
/db_xref="HGNC:HGNC:7492"
/db_xref="MIM:590065"
gene 4470..5511
/gene="ND2"
/gene_synonym="MTND2"
/nomenclature="Official Symbol: MT-ND2 | Name:
mitochondrially encoded NADH dehydrogenase 2 | Provided
by: HGNC:HGNC:7456"
/db_xref="GeneID:4536"
/db_xref="HGNC:HGNC:7456"
/db_xref="MIM:516001"
CDS 4470..5511
/gene="ND2"
/gene_synonym="MTND2"
/note="TAA stop codon is completed by the addition of 3' A
residues to the mRNA"
/codon_start=1
/transl_except=(pos:5511,aa:TERM)
/transl_table=2
/product="NADH dehydrogenase subunit 2"
/protein_id="YP_003024027.1"
/db_xref="GeneID:4536"
/db_xref="HGNC:HGNC:7456"
/db_xref="MIM:516001"
/translation="MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVL
TKKMNPRSTEAAIKYFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAM
AMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSIL
SIMAGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLL
LNLNSSTTTLLLSRTWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSL
IIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTT
LLLPISPFMLMIL"
STS 4481..5456
/gene="ND2"
/gene_synonym="MTND2"
/standard_name="PMC113853P1"
/db_xref="UniSTS:270258"
gene 5512..5579
/gene="TRNW"
/gene_synonym="MTTW"
/nomenclature="Official Symbol: MT-TW | Name:
mitochondrially encoded tRNA tryptophan | Provided by:
HGNC:HGNC:7501"
/db_xref="GeneID:4578"
/db_xref="HGNC:HGNC:7501"
/db_xref="MIM:590095"
tRNA 5512..5579
/gene="TRNW"
/gene_synonym="MTTW"
/product="tRNA-Trp"
/note="NAR: 1897"
/anticodon=(pos:5544..5546,aa:Trp,seq:tca)
/codon_recognized="UGA"
/db_xref="GeneID:4578"
/db_xref="HGNC:HGNC:7501"
/db_xref="MIM:590095"
gene complement(5587..5655)
/gene="TRNA"
/gene_synonym="MTTA"
/nomenclature="Official Symbol: MT-TA | Name:
mitochondrially encoded tRNA alanine | Provided by:
HGNC:HGNC:7475"
/db_xref="GeneID:4553"
/db_xref="HGNC:HGNC:7475"
/db_xref="MIM:590000"
tRNA complement(5587..5655)
/gene="TRNA"
/gene_synonym="MTTA"
/product="tRNA-Ala"
/note="NAR: 0097"
/anticodon=(pos:complement(5623..5625),aa:Ala,seq:tgc)
/codon_recognized="GCA"
/db_xref="GeneID:4553"
/db_xref="HGNC:HGNC:7475"
/db_xref="MIM:590000"
gene complement(5657..5729)
/gene="TRNN"
/gene_synonym="MTTN"
/nomenclature="Official Symbol: MT-TN | Name:
mitochondrially encoded tRNA asparagine | Provided by:
HGNC:HGNC:7493"
/db_xref="GeneID:4570"
/db_xref="HGNC:HGNC:7493"
/db_xref="MIM:590010"
tRNA complement(5657..5729)
/gene="TRNN"
/gene_synonym="MTTN"
/product="tRNA-Asn"
/note="NAR: 0297"
/anticodon=(pos:complement(5694..5696),aa:Asn,seq:gtt)
/codon_recognized="AAC"
/db_xref="GeneID:4570"
/db_xref="HGNC:HGNC:7493"
/db_xref="MIM:590010"
gene complement(5761..5826)
/gene="TRNC"
/gene_synonym="MTTC"
/nomenclature="Official Symbol: MT-TC | Name:
mitochondrially encoded tRNA cysteine | Provided by:
HGNC:HGNC:7477"
/db_xref="GeneID:4511"
/db_xref="HGNC:HGNC:7477"
/db_xref="MIM:590020"
tRNA complement(5761..5826)
/gene="TRNC"
/gene_synonym="MTTC"
/product="tRNA-Cys"
/note="NAR: 0497"
/anticodon=(pos:complement(5796..5798),aa:Cys,seq:gca)
/codon_recognized="UGC"
/db_xref="GeneID:4511"
/db_xref="HGNC:HGNC:7477"
/db_xref="MIM:590020"
gene complement(5826..5891)
/gene="TRNY"
/gene_synonym="MTTY"
/nomenclature="Official Symbol: MT-TY | Name:
mitochondrially encoded tRNA tyrosine | Provided by:
HGNC:HGNC:7502"
/db_xref="GeneID:4579"
/db_xref="HGNC:HGNC:7502"
/db_xref="MIM:590100"
tRNA complement(5826..5891)
/gene="TRNY"
/gene_synonym="MTTY"
/product="tRNA-Tyr"
/note="NAR: 1997"
/anticodon=(pos:complement(5860..5862),aa:Tyr,seq:gta)
/codon_recognized="UAC"
/db_xref="GeneID:4579"
/db_xref="HGNC:HGNC:7502"
/db_xref="MIM:590100"
gene 5904..7445
/gene="COX1"
/gene_synonym="COI; MTCO1"
/nomenclature="Official Symbol: MT-CO1 | Name:
mitochondrially encoded cytochrome c oxidase I | Provided
by: HGNC:HGNC:7419"
/db_xref="GeneID:4512"
/db_xref="HGNC:HGNC:7419"
/db_xref="MIM:516030"
CDS 5904..7445
/gene="COX1"
/gene_synonym="COI; MTCO1"
/note="cytochrome c oxidase I"
/codon_start=1
/transl_table=2
/product="cytochrome c oxidase subunit I"
/protein_id="YP_003024028.1"
/db_xref="GeneID:4512"
/db_xref="HGNC:HGNC:7419"
/db_xref="MIM:516030"
/translation="MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQP
GNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF
WLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILG
AINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTT
FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWA
MMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKW
SAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGG
FIHWFPLFSGYTLDQTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTW
NILSSVGSFISLTAVMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEP
VYMKS"
STS 6318..6918
/gene="COX1"
/gene_synonym="COI; MTCO1"
/standard_name="PMC55343P2"
/db_xref="UniSTS:273325"
STS 7125..7672
/standard_name="PMC20756P3"
/db_xref="UniSTS:271963"
STS 7166..7361
/gene="COX1"
/gene_synonym="COI; MTCO1"
/standard_name="D17S813E"
/db_xref="UniSTS:92461"
STS 7358..7937
/standard_name="PMC55343P3"
/db_xref="UniSTS:273326"
STS 7386..7513
/standard_name="RH98513"
/db_xref="UniSTS:83580"
gene complement(7446..7514)
/gene="TRNS1"
/gene_synonym="MTTS1"
/nomenclature="Official Symbol: MT-TS1 | Name:
mitochondrially encoded tRNA serine 1 (UCN)"
/db_xref="GeneID:4574"
/db_xref="HGNC:HGNC:7497"
/db_xref="MIM:590080"
tRNA complement(7446..7514)
/gene="TRNS1"
/gene_synonym="MTTS1"
/product="tRNA-Ser"
/note="NAR: 1697"
/anticodon=(pos:complement(7482..7484),aa:Ser,seq:tga)
/codon_recognized="UCN"
/db_xref="GeneID:4574"
/db_xref="HGNC:HGNC:7497"
/db_xref="MIM:590080"
STS 7483..8383
/standard_name="PMC20756P2"
/db_xref="UniSTS:271962"
STS 7483..8364
/standard_name="PMC109173P1"
/db_xref="UniSTS:270154"
STS 7483..7570
/standard_name="PMC20756P1"
/db_xref="UniSTS:271961"
gene 7518..7585
/gene="TRND"
/gene_synonym="MTTD"
/nomenclature="Official Symbol: MT-TD | Name:
mitochondrially encoded tRNA aspartic acid | Provided by:
HGNC:HGNC:7478"
/db_xref="GeneID:4555"
/db_xref="HGNC:HGNC:7478"
/db_xref="MIM:590015"
tRNA 7518..7585
/gene="TRND"
/gene_synonym="MTTD"
/product="tRNA-Asp"
/note="NAR: 0397"
/anticodon=(pos:7548..7550,aa:Asp,seq:gtc)
/codon_recognized="GAC"
/db_xref="GeneID:4555"
/db_xref="HGNC:HGNC:7478"
/db_xref="MIM:590015"
STS 7561..7983
/standard_name="PMC196577P3"
/db_xref="UniSTS:271816"
gene 7586..8269
/gene="COX2"
/gene_synonym="COII; MTCO2"
/nomenclature="Official Symbol: MT-CO2 | Name:
mitochondrially encoded cytochrome c oxidase II | Provided
by: HGNC:HGNC:7421"
/db_xref="GeneID:4513"
/db_xref="HGNC:HGNC:7421"
/db_xref="MIM:516040"
CDS 7586..8269
/gene="COX2"
/gene_synonym="COII; MTCO2"
/note="cytochrome c oxidase II"
/codon_start=1
/transl_table=2
/product="cytochrome c oxidase subunit II"
/protein_id="YP_003024029.1"
/db_xref="GeneID:4513"
/db_xref="HGNC:HGNC:7421"
/db_xref="MIM:516040"
/translation="MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFL
TLTTKLTNTNISDAQEMETVWTILPAIILVLIALPSLRILYMTDEVNDPSLTIKSIGH
QWYWTYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPIEAPIRMMITSQDVL
HSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKI
FEMGPVFTL"
STS 7690..7773
/gene="COX2"
/gene_synonym="COII; MTCO2"
/standard_name="D1S2077E"
/db_xref="UniSTS:151716"
STS 8164..8291
/standard_name="SHGC-57364"
/db_xref="UniSTS:67674"
STS 8280..8882
/standard_name="PMC55343P5"
/db_xref="UniSTS:273328"
STS 8280..8366
/standard_name="PMC55343P4"
/db_xref="UniSTS:273327"
gene 8295..8364
/gene="TRNK"
/gene_synonym="MTTK"
/nomenclature="Official Symbol: MT-TK | Name:
mitochondrially encoded tRNA lysine | Provided by:
HGNC:HGNC:7489"
/db_xref="GeneID:4566"
/db_xref="HGNC:HGNC:7489"
/db_xref="MIM:590060"
tRNA 8295..8364
/gene="TRNK"
/gene_synonym="MTTK"
/product="tRNA-Lys"
/note="NAR: 1197"
/anticodon=(pos:8323..8325,aa:Lys,seq:ttt)
/codon_recognized="AAA"
/db_xref="GeneID:4566"
/db_xref="HGNC:HGNC:7489"
/db_xref="MIM:590060"
gene 8366..8572
/gene="ATP8"
/gene_synonym="ATPase8; MTATP8"
/nomenclature="Official Symbol: MT-ATP8 | Name:
mitochondrially encoded ATP synthase 8 | Provided by:
HGNC:HGNC:7415"
/db_xref="GeneID:4509"
/db_xref="HGNC:HGNC:7415"
/db_xref="MIM:516070"
CDS 8366..8572
/gene="ATP8"
/gene_synonym="ATPase8; MTATP8"
/note="ATP synthase 8; ATPase subunit 8"
/codon_start=1
/transl_table=2
/product="ATP synthase F0 subunit 8"
/protein_id="YP_003024030.1"
/db_xref="GeneID:4509"
/db_xref="HGNC:HGNC:7415"
/db_xref="MIM:516070"
/translation="MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKM
KNYNKPWEPKWTKICSLHSLPPQS"
gene 8527..9207
/gene="ATP6"
/gene_synonym="ATPase6; MTATP6"
/nomenclature="Official Symbol: MT-ATP6 | Name:
mitochondrially encoded ATP synthase 6 | Provided by:
HGNC:HGNC:7414"
/db_xref="GeneID:4508"
/db_xref="HGNC:HGNC:7414"
/db_xref="MIM:516060"
CDS 8527..9207
/gene="ATP6"
/gene_synonym="ATPase6; MTATP6"
/note="ATP synthase 6; ATPase subunit 6"
/codon_start=1
/transl_table=2
/product="ATP synthase F0 subunit 6"
/protein_id="YP_003024031.1"
/db_xref="GeneID:4508"
/db_xref="HGNC:HGNC:7414"
/db_xref="MIM:516060"
/translation="MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLIT
TQQWLIKLTSKQMMTMHNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNL
AMAIPLWAGTVIMGFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRL
TANITAGHLLMHLIGSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLV
SLYLHDNT"
STS 8779..9416
/standard_name="PMC55343P7"
/db_xref="UniSTS:273330"
STS 8779..8882
/gene="ATP6"
/gene_synonym="ATPase6; MTATP6"
/standard_name="PMC55343P6"
/db_xref="UniSTS:273329"
gene 9207..9990
/gene="COX3"
/gene_synonym="COIII; MTCO3"
/nomenclature="Official Symbol: MT-CO3 | Name:
mitochondrially encoded cytochrome c oxidase III |
Provided by: HGNC:HGNC:7422"
/db_xref="GeneID:4514"
/db_xref="HGNC:HGNC:7422"
/db_xref="MIM:516050"
CDS 9207..9990
/gene="COX3"
/gene_synonym="COIII; MTCO3"
/note="cytochrome c oxidase III; TAA stop codon is
completed by the addition of 3' A residues to the mRNA"
/codon_start=1
/transl_except=(pos:9990,aa:TERM)
/transl_table=2
/product="cytochrome c oxidase subunit III"
/protein_id="YP_003024032.1"
/db_xref="GeneID:4514"
/db_xref="HGNC:HGNC:7422"
/db_xref="MIM:516050"
/translation="MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLM
LGLLTNTLTMYQWWRDVTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFY
HSSLAPTPQLGGHWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMI
QALLITILLGLYFTLLQASEYFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTIC
FIRQLMFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS"
STS 9342..9416
/gene="COX3"
/gene_synonym="COIII; MTCO3"
/standard_name="PMC55343P8"
/db_xref="UniSTS:273331"
gene 9991..10058
/gene="TRNG"
/gene_synonym="MTTG"
/nomenclature="Official Symbol: MT-TG | Name:
mitochondrially encoded tRNA glycine | Provided by:
HGNC:HGNC:7486"
/db_xref="GeneID:4563"
/db_xref="HGNC:HGNC:7486"
/db_xref="MIM:590035"
tRNA 9991..10058
/gene="TRNG"
/gene_synonym="MTTG"
/product="tRNA-Gly"
/note="NAR: 0797"
/anticodon=(pos:10021..10023,aa:Gly,seq:tcc)
/codon_recognized="GGA"
/db_xref="GeneID:4563"
/db_xref="HGNC:HGNC:7486"
/db_xref="MIM:590035"
gene 10059..10404
/gene="ND3"
/gene_synonym="MTND3"
/nomenclature="Official Symbol: MT-ND3 | Name:
mitochondrially encoded NADH dehydrogenase 3 | Provided
by: HGNC:HGNC:7458"
/db_xref="GeneID:4537"
/db_xref="HGNC:HGNC:7458"
/db_xref="MIM:516002"
CDS 10059..10404
/gene="ND3"
/gene_synonym="MTND3"
/note="NADH dehydrogenase, subunit 3 (complex I); TAA stop
codon is completed by the addition of 3' A residues to the
mRNA"
/codon_start=1
/transl_except=(pos:10404,aa:TERM)
/transl_table=2
/product="NADH dehydrogenase subunit 3"
/protein_id="YP_003024033.1"
/db_xref="GeneID:4537"
/db_xref="HGNC:HGNC:7458"
/db_xref="MIM:516002"
/translation="MNFALILMINTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPM
SPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMVMSSLLLIIILALSL
AYEWLQKGLDWTE"
gene 10405..10469
/gene="TRNR"
/gene_synonym="MTTR"
/nomenclature="Official Symbol: MT-TR | Name:
mitochondrially encoded tRNA arginine | Provided by:
HGNC:HGNC:7496"
/db_xref="GeneID:4573"
/db_xref="HGNC:HGNC:7496"
/db_xref="MIM:590005"
tRNA 10405..10469
/gene="TRNR"
/gene_synonym="MTTR"
/product="tRNA-Arg"
/note="NAR: 0197"
/anticodon=(pos:10435..10437,aa:Arg,seq:tcg)
/codon_recognized="CGA"
/db_xref="GeneID:4573"
/db_xref="HGNC:HGNC:7496"
/db_xref="MIM:590005"
gene 10470..10766
/gene="ND4L"
/gene_synonym="MTND4L"
/nomenclature="Official Symbol: MT-ND4L | Name:
mitochondrially encoded NADH 4L dehydrogenase | Provided
by: HGNC:HGNC:7460"
/db_xref="GeneID:4539"
/db_xref="HGNC:HGNC:7460"
/db_xref="MIM:516004"
CDS 10470..10766
/gene="ND4L"
/gene_synonym="MTND4L"
/note="NADH dehydrogenase, subunit 4L (complex I)"
/codon_start=1
/transl_table=2
/product="NADH dehydrogenase subunit 4L"
/protein_id="YP_003024034.1"
/db_xref="GeneID:4539"
/db_xref="HGNC:HGNC:7460"
/db_xref="MIM:516004"
/translation="MPLIYMNIMLAFTISLLGMLVYRSHLMSSLLCLEGMMLSLFIMA
TLMTLNTHSLLANIVPIAMLVFAACEAAVGLALLVSISNTYGLDYVHNLNLLQC"
gene 10760..12137
/gene="ND4"
/gene_synonym="MTND4"
/nomenclature="Official Symbol: MT-ND4 | Name:
mitochondrially encoded NADH dehydrogenase 4 | Provided
by: HGNC:HGNC:7459"
/db_xref="GeneID:4538"
/db_xref="HGNC:HGNC:7459"
/db_xref="MIM:516003"
CDS 10760..12137
/gene="ND4"
/gene_synonym="MTND4"
/note="NADH dehydrogenase, subunit 4 (complex I); TAA stop
codon is completed by the addition of 3' A residues to the
mRNA"
/codon_start=1
/transl_except=(pos:12137,aa:TERM)
/transl_table=2
/product="NADH dehydrogenase subunit 4"
/protein_id="YP_003024035.1"
/db_xref="GeneID:4538"
/db_xref="HGNC:HGNC:7459"
/db_xref="MIM:516003"
/translation="MLKLIVPTIMLLPLTWLSKKHMIWINTTTHSLIISIIPLLFFNQ
INNNLFSCSPTFSSDPLTTPLLMLTTWLLPLTIMASQRHLSSEPLSRKKLYLSMLISL
QISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPL
LIALIYTHNTLGSLNILLLTLTAQELSNSWANNLMWLAYTMAFMVKMPLYGLHLWLPK
AHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLVLSLWGMIMTSSIC
LRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNY
ERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNIT
LLLTGLNMLVTALYSLYMFTTTQWGSLTHHINNMKPSFTRENTLMFMHLSPILLLSLN
PDIITGFSS"
gene 12138..12206
/gene="TRNH"
/gene_synonym="MTTH"
/nomenclature="Official Symbol: MT-TH | Name:
mitochondrially encoded tRNA histidine | Provided by:
HGNC:HGNC:7487"
/db_xref="GeneID:4564"
/db_xref="HGNC:HGNC:7487"
/db_xref="MIM:590040"
tRNA 12138..12206
/gene="TRNH"
/gene_synonym="MTTH"
/product="tRNA-His"
/note="NAR: 0897"
/anticodon=(pos:12168..12170,aa:His,seq:gtg)
/codon_recognized="CAC"
/db_xref="GeneID:4564"
/db_xref="HGNC:HGNC:7487"
/db_xref="MIM:590040"
gene 12207..12265
/gene="TRNS2"
/gene_synonym="MTTS2"
/nomenclature="Official Symbol: MT-TS2 | Name:
mitochondrially encoded tRNA serine 2 (AGU/C) | Provided
by: HGNC:HGNC:7498"
/db_xref="GeneID:4575"
/db_xref="HGNC:HGNC:7498"
/db_xref="MIM:590085"
tRNA 12207..12265
/gene="TRNS2"
/gene_synonym="MTTS2"
/product="tRNA-Ser"
/note="NAR: 1656"
/anticodon=(pos:12226..12228,aa:Ser,seq:gct)
/codon_recognized="AGY"
/db_xref="GeneID:4575"
/db_xref="HGNC:HGNC:7498"
/db_xref="MIM:590085"
gene 12266..12336
/gene="TRNL2"
/gene_synonym="MTTL2"
/nomenclature="Official Symbol: MT-TL2 | Name:
mitochondrially encoded tRNA leucine 2 (CUN) | Provided
by: HGNC:HGNC:7491"
/db_xref="GeneID:4568"
/db_xref="HGNC:HGNC:7491"
/db_xref="MIM:590055"
tRNA 12266..12336
/gene="TRNL2"
/gene_synonym="MTTL2"
/product="tRNA-Leu"
/note="NAR: 1097"
/anticodon=(pos:12298..12300,aa:Leu,seq:tag)
/codon_recognized="CUN"
/db_xref="GeneID:4568"
/db_xref="HGNC:HGNC:7491"
/db_xref="MIM:590055"
gene 12337..14148
/gene="ND5"
/gene_synonym="MTND5"
/nomenclature="Official Symbol: MT-ND5 | Name:
mitochondrially encoded NADH dehydrogenase 5 | Provided
by: HGNC:HGNC:7461"
/db_xref="GeneID:4540"
/db_xref="HGNC:HGNC:7461"
/db_xref="MIM:516005"
CDS 12337..14148
/gene="ND5"
/gene_synonym="MTND5"
/note="NADH dehydrogenase, subunit 5 (complex I)"
/codon_start=1
/transl_table=2
/product="NADH dehydrogenase subunit 5"
/protein_id="YP_003024036.1"
/db_xref="GeneID:4540"
/db_xref="HGNC:HGNC:7461"
/db_xref="MIM:516005"
/translation="MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTF
IISLFPTTMFMCLDQEVIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIME
FSLWYMNSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYA
RADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLL
AAAGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTL
TLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAF
FKAMLFMCSGSIIHNLNNEQDIRKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSK
DHIIETANMSYTNAWALSITLIATSLTSAYSTRMILLTLTGQPRFPTLTNINENNPTL
LNPIKRLAAGSLFAGFLITNNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLNYLT
NKLKMKSPLCTFYFSNMLGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTI
SQHQISTSIITSTQKGMIKLYFLSFFFPLILTLLLIT"
STS 13068..13143
/gene="ND5"
/gene_synonym="MTND5"
/standard_name="PMC55343P9"
/db_xref="UniSTS:273332"
STS 13593..14206
/standard_name="PMC55343P10"
/db_xref="UniSTS:273323"
STS 14104..14206
/standard_name="PMC55343P12"
/db_xref="UniSTS:273324"
gene complement(14149..14673)
/gene="ND6"
/gene_synonym="MTND6"
/nomenclature="Official Symbol: MT-ND6 | Name:
mitochondrially encoded NADH dehydrogenase 6 | Provided
by: HGNC:HGNC:7462"
/db_xref="GeneID:4541"
/db_xref="HGNC:HGNC:7462"
/db_xref="MIM:516006"
CDS complement(14149..14673)
/gene="ND6"
/gene_synonym="MTND6"
/note="NADH dehydrogenase, subunit 6 (complex I)"
/codon_start=1
/transl_table=2
/product="NADH dehydrogenase subunit 6"
/protein_id="YP_003024037.1"
/db_xref="GeneID:4541"
/db_xref="HGNC:HGNC:7462"
/db_xref="MIM:516006"
/translation="MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIIL
NFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGL
VLWVKEYDGVVVVVNFNSVGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTL
FVGVYIVIEIARGN"
gene complement(14674..14742)
/gene="TRNE"
/gene_synonym="MTTE"
/nomenclature="Official Symbol: MT-TE | Name:
mitochondrially encoded tRNA glutamic acid | Provided by:
HGNC:HGNC:7479"
/db_xref="GeneID:4556"
/db_xref="HGNC:HGNC:7479"
/db_xref="MIM:590025"
tRNA complement(14674..14742)
/gene="TRNE"
/gene_synonym="MTTE"
/product="tRNA-Glu"
/note="NAR: 0697"
/anticodon=(pos:complement(14710..14712),aa:Glu,seq:ttc)
/codon_recognized="GAA"
/db_xref="GeneID:4556"
/db_xref="HGNC:HGNC:7479"
/db_xref="MIM:590025"
gene 14747..15887
/gene="CYTB"
/gene_synonym="MTCYB"
/nomenclature="Official Symbol: MT-CYB | Name:
mitochondrially encoded cytochrome b | Provided by:
HGNC:HGNC:7427"
/db_xref="GeneID:4519"
/db_xref="HGNC:HGNC:7427"
/db_xref="MIM:516020"
CDS 14747..15887
/gene="CYTB"
/gene_synonym="MTCYB"
/note="TAA stop codon is completed by the addition of 3' A
residues to the mRNA"
/codon_start=1
/transl_except=(pos:15887,aa:TERM)
/transl_table=2
/product="cytochrome b"
/protein_id="YP_003024038.1"
/db_xref="GeneID:4519"
/db_xref="HGNC:HGNC:7427"
/db_xref="MIM:516020"
/translation="MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQ
ITTGLFLAMHYSPDASTAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGL
YYGSFLYSETWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL
VQWIWGGYSVDSPTLTRFFTFHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKI
TFHPYYTIKDALGLLLFLLSLMTLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLF
AYTILRSVPNKLGGVLALLLSILILAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLI
LTWIGGQPVSYPFTIIGQVASVLYFTTILILMPTISLIENKMLKWA"
STS 15191..15307
/gene="CYTB"
/gene_synonym="MTCYB"
/standard_name="GDB:451664"
/db_xref="UniSTS:157340"
STS 15698..15777
/gene="CYTB"
/gene_synonym="MTCYB"
/standard_name="D1S2076E"
/db_xref="UniSTS:151706"
gene 15888..15953
/gene="TRNT"
/gene_synonym="MTTT"
/nomenclature="Official Symbol: MT-TT | Name:
mitochondrially encoded tRNA threonine | Provided by:
HGNC:HGNC:7499"
/db_xref="GeneID:4576"
/db_xref="HGNC:HGNC:7499"
/db_xref="MIM:590090"
tRNA 15888..15953
/gene="TRNT"
/gene_synonym="MTTT"
/product="tRNA-Thr"
/note="NAR: 1797"
/anticodon=(pos:15919..15921,aa:Thr,seq:tgt)
/codon_recognized="ACA"
/db_xref="GeneID:4576"
/db_xref="HGNC:HGNC:7499"
/db_xref="MIM:590090"
gene complement(15956..16023)
/gene="TRNP"
/gene_synonym="MTTP"
/nomenclature="Official Symbol: MT-TP | Name:
mitochondrially encoded tRNA proline | Provided by:
HGNC:HGNC:7494"
/db_xref="GeneID:4571"
/db_xref="HGNC:HGNC:7494"
/db_xref="MIM:590075"
tRNA complement(15956..16023)
/gene="TRNP"
/gene_synonym="MTTP"
/product="tRNA-Pro"
/note="NAR: 1597"
/anticodon=(pos:complement(15990..15992),aa:Pro,seq:tgg)
/codon_recognized="CCA"
/db_xref="GeneID:4571"
/db_xref="HGNC:HGNC:7494"
/db_xref="MIM:590075"