Nagelkerke r-square in multiple imputed datasets #694
AngeloArias97
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Impute, analyse and pool
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Dear Prof. van Buuren,
Thank you for developing such an amazing tool. I was wondering if you can guide me to obtain Nagelkerke r-square value from my logistic regression model.
See an example of my code.
model1 <- with(imp, {
data <- data.frame(
lapply(seq_along(exposome_factors), function(i) {
as.numeric(get(exposome_factors[i])) * coefficients[i]
})
)
colnames(data) <- exposome_factors
data$ES_SCZ <- rowSums(data) + 2
data$ES_SCZ <- scale(data$ES_SCZ)
data$ES_SCZ <- ifelse(data$ES_SCZ >= quantile(data$ES_SCZ, 0.75, na.rm = TRUE), 1, 0)
glm(PE_18_Distressing ~ ES_SCZ + sex + maternal_education + imd_income_1993_maternal, data = data, family = binomial)
})
pooled_results1 <- pool(model1)
summary(pooled_results1, conf.int = TRUE)
In stackoverflow i found this answer, do you think is appropriate for my case? https://stackoverflow.com/questions/65245547/using-mice-inputed-data-sets-in-glm-analysis-can-pooled-model-fit-indices-be-ob
Thank you so much!
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