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ameliaritger · Nov 20, 2024 · 9325e6f · 9325e6f
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diff --git a/README.md b/README.md
@@ -5,31 +5,30 @@
 ## What's in this repository?
 This repository contains the scripts and files related to the development of a Marine Heatwave Simulator (MHWsim) using a Raspberry Pi.
 
-This repository is maintained by Amelia Ritger (GitHub: [@ameliaritger](https://github.com/ameliaritger)) at the University of California, Santa Barbara in the Hofmann Lab, Department of Ecology, Evolution, & Marine Biology. Please direct any questions or comments about this repository to [Amelia Ritger](mailto:aritger@ucsb.edu).
+This repository is maintained by Amelia Ritger (GitHub: [@ameliaritger](https://github.com/ameliaritger)) at the University of California, Santa Barbara in the Department of Ecology, Evolution, & Marine Biology. Please direct any questions or comments about this repository to [Amelia Ritger](mailto:aritger@ucsb.edu).
 
 ## How is this repository structured?
 ```
 .
 |
 ├── media/                                      # directory containing media files for project repo
 |
-├── simulator/                                  # directory containing resources for building and running the RPi MHWsim system
-|   └── code/                                   # directory with scripts for the MHWsim
-|      └── Alert.py                             # script for sending SMS alerts
-|      └── CleanUp.py                           # script for saving data, clearing lists/variables, and going to sleep
-|      └── IO_ctrl.py                           # script for initializing relay board
-|      └── MHWRamp.py                           # script for ramping up and down temperatures at start/end of MHW event
-|      └── MHWsim.py                            # script for initializing MHWsim objects, parameters and then running the MHWsim 
-|      └── Memory.py                            # script for constructing and saving to .csv file
-|      └── PID.py                               # script for Proportional–integral–derivative controller algorithm
-|      └── SensorAverage.py                     # script for averaging multiple consecutive temperature probe readings and calculating the average temperature across replicates
-|      └── SensorInfo.py                        # script to enter temperature probe ROM numbers and location identification, and calibration values for each probe
-|      └── Temperature.py                       # script for reading temperature probes
-|      └── main.py                              # main script to run all code associated with MHWsim
-|      └── mhw_profile.csv                      # MHWsim experiment data, required for initial code test
+├── code/                                   # directory with scripts for the MHWsim
+|   └── Alert.py                             # script for sending SMS alerts
+|   └── CleanUp.py                           # script for saving data, clearing lists/variables, and going to sleep
+|   └── IO_ctrl.py                           # script for initializing relay board
+|   └── MHWRamp.py                           # script for ramping up and down temperatures at start/end of MHW event
+|   └── MHWsim.py                            # script for initializing MHWsim objects, parameters and then running the MHWsim 
+|   └── Memory.py                            # script for constructing and saving to .csv file
+|   └── PID.py                               # script for Proportional–integral–derivative controller algorithm
+|   └── SensorAverage.py                     # script for averaging multiple consecutive temperature probe readings and calculating the average temperature across replicates
+|   └── SensorInfo.py                        # script to enter temperature probe ROM numbers and location identification, and calibration values for each probe
+|   └── Temperature.py                       # script for reading temperature probes
+|   └── main.py                              # main script to run all code associated with MHWsim
+|   └── mhw_profile.csv                      # MHWsim experiment data, required for initial code test
 |
-|   └── documentation/                          # directory containing MHWsim system build documentation
-|      └── rpiMHWsimConstruction.docx           # document for building the RPi MHWsim system
+├── documentation/                          # directory containing MHWsim system build documentation
+|   └── rpiMHWsimConstruction.docx           # document for building the RPi MHWsim system
 |
 ├── .gitignore
 |

diff --git a/simulator/code/Alert.py → code/Alert.py b/simulator/code/Alert.py → code/Alert.py
diff --git a/simulator/code/CleanUp.py → code/CleanUp.py b/simulator/code/CleanUp.py → code/CleanUp.py
diff --git a/simulator/code/IO_ctrl.py → code/IO_ctrl.py b/simulator/code/IO_ctrl.py → code/IO_ctrl.py
diff --git a/simulator/code/MHWRamp.py → code/MHWRamp.py b/simulator/code/MHWRamp.py → code/MHWRamp.py
diff --git a/simulator/code/MHWsim.py → code/MHWsim.py b/simulator/code/MHWsim.py → code/MHWsim.py
diff --git a/simulator/code/Memory.py → code/Memory.py b/simulator/code/Memory.py → code/Memory.py
diff --git a/simulator/code/PID.py → code/PID.py b/simulator/code/PID.py → code/PID.py
diff --git a/simulator/code/SensorAverage.py → code/SensorAverage.py b/simulator/code/SensorAverage.py → code/SensorAverage.py
diff --git a/simulator/code/SensorInfo.py → code/SensorInfo.py b/simulator/code/SensorInfo.py → code/SensorInfo.py
diff --git a/simulator/code/Temperature.py → code/Temperature.py b/simulator/code/Temperature.py → code/Temperature.py
diff --git a/simulator/code/main.py → code/main.py b/simulator/code/main.py → code/main.py
diff --git a/simulator/code/mhw_profile.csv → code/mhw_profile.csv b/simulator/code/mhw_profile.csv → code/mhw_profile.csv
diff --git a/...tor/documentation/MHWsimConstruction.docx → documentation/MHWsimConstruction.docx b/...tor/documentation/MHWsimConstruction.docx → documentation/MHWsimConstruction.docx