v0.6.0

Added

lightmotif

• Validating constructor ::pwm::FrequencyMatrix::new testing for frequencies on each ranks.
• Getter to the raw data matrix of a ::pwm::FrequencyMatrix.

lightmotif-io

New crate with JASPAR, TRANSFAC and UNIPROBE format parsers.

Changed

lightmotif

• Make max_score and min_score columns of ::pwm::ScoringMatrix ignore the wildcard symbol column.

lightmotif-tfmpvalue

• Invert decay in TfmPvalue to reduce rounding errors when computing granularity.
• Use a fast integer hashing algorithm for i64 keys in maps used for recording Q-values.
• Compute the optimal column permutation to accelerate the computation of score distributions.

Removed

lightmotif-transfac

Deprecate crate in favour of lightmotif-io.