README

README.md

@@ -30,20 +30,23 @@ Converts
 - *Canis lupus familiaris* ROS_Cfam_1.0 Ensembl 110 (55,335 transcripts) in 1.20 seconds. 
 - *Gallus galus* bGalGal1 Ensembl 110 (72,689 transcripts) in 1.36 seconds.
 
-> What's new on v.1.9.1
+> What's new on v.1.9.2
 >
-> - Fixes a recently noted bug with UTR coordinates and first exons in - strand transcripts
-> - Improves the readability of the versioning in CL interface
-> - Disable automatic UTR annotations (no more five/three_prime_utr). Will be optional in the next release.
+> - Adds `--no-gene` flag to only perform conversion without isoforms!
+> - Modifies `-i` to be required unless `--no-gene` mode is present.
+> - Refactors BedRecord.
+> - Isolates CLI as owned mod.
 
 ## Usage
 ``` rust
 Usage: bed2gtf[EXE] --bed/-b <BED> --isoforms/-i <ISOFORMS> --output/-o <OUTPUT>
 
 Arguments:
-    --bed <BED>: a .bed file
-    --isoforms <ISOFORMS>: a tab-delimited file
-    --output <OUTPUT>: path to output file
+    -b, --bed <BED>: a .bed file
+    -i, --isoforms <ISOFORMS>: a tab-delimited file
+    -o, --output <OUTPUT>: path to output file
+    -g, --gz[=<FLAG>]          Compress output file [default: false] [possible values: true, false]
+    -n, --no-gene[=<FLAG>]     Flag to disable gene_id feature [default: false] [possible values: true, false]
 
 Options:
     --help: print help