.travis.yml

language: generic

matrix:
  include:
    - os: linux
      env: PY_VERSION=2.7
    - os: linux
      env: PY_VERSION=3.5
    - os: linux
      env: PY_VERSION=3.6
    - os: osx
      env: PY_VERSION=2.7
    - os: osx
      env: PY_VERSION=3.5
    - os: osx
      env: PY_VERSION=3.6

install:
  - echo $PY_VERSION
  - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
      sudo apt-get update;
      osconda=Linux;
    else
      osconda=MacOSX;
    fi
  - if [[ "$PY_VERSION" == "2.7" ]]; then
      wget https://repo.continuum.io/miniconda/Miniconda2-latest-$osconda-x86_64.sh -O miniconda.sh;
    else
      wget https://repo.continuum.io/miniconda/Miniconda3-latest-$osconda-x86_64.sh -O miniconda.sh;
    fi
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  - conda info -a
  - conda create -q -n test-environment python=$PY_VERSION
  - conda config --add channels bioconda
  - source activate test-environment
  - conda install bowtie2 biopython pytest
  - python --version

script:
  - export bowtie2=$(which bowtie2)
  - pytest -v