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aghaeifar · Mar 6, 2024 · fa998f4 · fa998f4
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commit fa998f4
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Showing 5 changed files with 9 additions and 18 deletions.
diff --git a/MATLAB/plot_results.m b/MATLAB/plot_results.m
@@ -46,6 +46,7 @@
         relative_signal  = squeeze(relative_signal);       
         h = semilogx(vessel_radius, relative_signal); xlabel('Vessel radius (um)'); ylabel('BOLD Signal %'); 
         hold on;
+        ylim([0, 7])
 %     else
 %         subplot(2,1,2)
 %         relative_signal  = signal_magnitude{seq}(:,:,:,:,2) - signal_magnitude{seq}(:,:,:,:,1);

diff --git a/README.md b/README.md
@@ -1,11 +1,14 @@
 
 
+<div align="center">
+
 ![Build Status](https://github.com/aghaeifar/SpinWalk/workflows/CMake/badge.svg)
 [![Lates Release](https://img.shields.io/github/v/release/aghaeifar/SpinWalk)](https://github.com/aghaeifar/SpinWalk/releases)
 ![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/aghaeifar/SpinWalk)
 ![GitHub top language](https://img.shields.io/github/languages/top/aghaeifar/SpinWalk)
 ![License](https://img.shields.io/github/license/aghaeifar/SpinWalk)
 
+</div>
 
 <p align="center">
   <a href="https://github.com/aghaeifar/SpinWalk">

diff --git a/config/config_default.ini b/config/config_default.ini
@@ -35,31 +35,18 @@ TR = 0.010
 TE[0] = 0.005
 TE[1] = 0.1
 TE[2] = 0.2
-TE[3] = 0.3
-TE[4] = 0.4
-TE[5] = 0.5
-TE[6] = 0.6
-TE[7] = 0.7
-TE[8] = 0.8
-TE[9] = 0.9
 ; RF Flip angle in degree 
 RF_FA[0] = 15.0
 RF_FA[1] = 0.0
 RF_FA[2] = 0.0
-RF_FA[3] = 0.0
-RF_FA[4] = 0.0
 ; RF Phase in degree. Note PHASE_CYCLING will be added to the phase of the first RF
 RF_PH[0] = 0.0
 RF_PH[1] = 0.0
 RF_PH[2] = 0.0
-RF_PH[3] = 0.0
-RF_PH[4] = 0.0
 ; Time (sec) to apply RF. The first RF start time is always 0.0
 RF_ST[0] = 0.0
 RF_ST[1] = 0.1
 RF_ST[2] = 0.2
-RF_ST[3] = 0.3
-RF_ST[4] = 0.4
 ; Dephasing in degree. The initial spin in the population will experience a dephasing of 0.0 degrees. Dephasing will then progressively increase in a linear manner up to the final spin, which will undergo dephasing as specified by the given parameter
 DEPHASING[0] = 
 DEPHASING[1] =

diff --git a/config/gre.ini b/config/gre.ini
@@ -22,4 +22,4 @@ RF_ST[0] = 0.0
 [SIMULATION_PARAMETERS]
 ; use 0 for random seed generation, otherwise use a positive integer to make a reproducible simulation
 SEED = 10
-CROSS_BOUNDARY = 0
+CROSS_BOUNDARY = 0
diff --git a/src/miscellaneous.h b/src/miscellaneous.h
@@ -23,11 +23,11 @@
 
 #define ERR_MSG  "\033[1;31mError:\033[0m "
 #define ROUND(x) ((long)((x)+0.5))
-#define MAX_RF 128          // maximum number of RF
+#define MAX_RF 256          // maximum number of RF
 #define MAX_TE 256          // maximum number of echo times
-#define MAX_T12 128         // maximum number of relaxation times
-#define MAX_DEPHASE 128     // maximum number of dephasing
-#define MAX_GRADIENT 128    // maximum number of gradient
+#define MAX_T12 256         // maximum number of relaxation times
+#define MAX_DEPHASE 256     // maximum number of dephasing
+#define MAX_GRADIENT 256    // maximum number of gradient
 
 typedef struct simulation_parameters
 {