From 05a73d97378e9663d78cf80d4a47c0dc1d442c52 Mon Sep 17 00:00:00 2001
From: Ali Aghaeifar <ali.aghaeifar@tuebingen.mpg.de>
Date: Fri, 20 Dec 2024 22:40:08 +0100
Subject: [PATCH] dMRI to dwi

---
 CMakeLists.txt                   | 4 ++--
 src/{dMRI => dwi}/CMakeLists.txt | 2 +-
 src/{dMRI => dwi}/handler.cpp    | 0
 src/{dMRI => dwi}/handler.h      | 0
 src/{dMRI => dwi}/pgse.cpp       | 0
 src/{dMRI => dwi}/pgse.h         | 0
 src/spinwalk.cu                  | 2 +-
 7 files changed, 4 insertions(+), 4 deletions(-)
 rename src/{dMRI => dwi}/CMakeLists.txt (80%)
 rename src/{dMRI => dwi}/handler.cpp (100%)
 rename src/{dMRI => dwi}/handler.h (100%)
 rename src/{dMRI => dwi}/pgse.cpp (100%)
 rename src/{dMRI => dwi}/pgse.h (100%)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 8fd8a6f..f9ced32 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -41,13 +41,13 @@ endif()
 # Add Boost and CUDA include directories
 include_directories(${Boost_INCLUDE_DIRS} ${HDF5_INCLUDE_DIRS} ./include ./src ./src/shapes)
 # Add subfolders
-add_subdirectory(./src/dMRI)
+add_subdirectory(./src/dwi)
 add_subdirectory(./src/phantom)
 add_subdirectory(./src/config)
 add_subdirectory(./src/sim)
 
 # Add the executable
-set(SOURCES ./src/spinwalk.cu ${SUBCOMMAND_PHANTOM} ${SUBCOMMAND_SIM} ${SUBCOMMAND_GRADIENT} ${SUBCOMMAND_CONFIG})
+set(SOURCES ./src/spinwalk.cu ${SUBCOMMAND_PHANTOM} ${SUBCOMMAND_SIM} ${SUBCOMMAND_DWI} ${SUBCOMMAND_CONFIG})
 
 if(CMAKE_CUDA_COMPILER)
     add_executable(${project} ${SOURCES})
diff --git a/src/dMRI/CMakeLists.txt b/src/dwi/CMakeLists.txt
similarity index 80%
rename from src/dMRI/CMakeLists.txt
rename to src/dwi/CMakeLists.txt
index 7ac80cd..3a3922c 100644
--- a/src/dMRI/CMakeLists.txt
+++ b/src/dwi/CMakeLists.txt
@@ -1,4 +1,4 @@
-set(SUBCOMMAND_GRADIENT
+set(SUBCOMMAND_DWI
     ${CMAKE_CURRENT_SOURCE_DIR}/handler.cpp
     ${CMAKE_CURRENT_SOURCE_DIR}/pgse.cpp
     PARENT_SCOPE)
\ No newline at end of file
diff --git a/src/dMRI/handler.cpp b/src/dwi/handler.cpp
similarity index 100%
rename from src/dMRI/handler.cpp
rename to src/dwi/handler.cpp
diff --git a/src/dMRI/handler.h b/src/dwi/handler.h
similarity index 100%
rename from src/dMRI/handler.h
rename to src/dwi/handler.h
diff --git a/src/dMRI/pgse.cpp b/src/dwi/pgse.cpp
similarity index 100%
rename from src/dMRI/pgse.cpp
rename to src/dwi/pgse.cpp
diff --git a/src/dMRI/pgse.h b/src/dwi/pgse.h
similarity index 100%
rename from src/dMRI/pgse.h
rename to src/dwi/pgse.h
diff --git a/src/spinwalk.cu b/src/spinwalk.cu
index 2486663..38c2bc1 100644
--- a/src/spinwalk.cu
+++ b/src/spinwalk.cu
@@ -26,7 +26,7 @@
 #include "definitions.h"
 #include "sim/monte_carlo.cuh"
 #include "phantom/handler.h"
-#include "dMRI/handler.h"
+#include "dwi/handler.h"
 #include "config/handler.h"
 #ifdef __CUDACC__
 #include "sim/device_helper.cuh"