-
-
Notifications
You must be signed in to change notification settings - Fork 213
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #712 from adi271001/sepsis-survival-prediction
Sepsis survival prediction
- Loading branch information
Showing
41 changed files
with
130,953 additions
and
0 deletions.
There are no files selected for viewing
110,205 changes: 110,205 additions & 0 deletions
110,205
Sepsis Survival Prediction/Dataset/s41598-020-73558-3_sepsis_survival_primary_cohort.csv
Large diffs are not rendered by default.
Oops, something went wrong.
19,052 changes: 19,052 additions & 0 deletions
19,052
Sepsis Survival Prediction/Dataset/s41598-020-73558-3_sepsis_survival_study_cohort.csv
Large diffs are not rendered by default.
Oops, something went wrong.
138 changes: 138 additions & 0 deletions
138
Sepsis Survival Prediction/Dataset/s41598-020-73558-3_sepsis_survival_validation_cohort.csv
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,138 @@ | ||
age_years,sex_0male_1female,episode_number,hospital_outcome_1alive_0dead | ||
20,0,1,1 | ||
22,0,1,1 | ||
26,1,2,0 | ||
33,1,1,1 | ||
33,0,1,1 | ||
33,0,2,0 | ||
35,0,1,1 | ||
35,1,1,1 | ||
36,0,1,1 | ||
36,1,1,1 | ||
38,1,1,1 | ||
40,0,1,1 | ||
41,1,1,1 | ||
42,0,1,1 | ||
43,1,2,0 | ||
45,0,1,1 | ||
46,1,1,1 | ||
47,1,1,1 | ||
48,1,2,0 | ||
48,0,1,1 | ||
49,0,1,1 | ||
50,0,1,1 | ||
50,0,1,1 | ||
52,0,1,1 | ||
52,0,1,1 | ||
53,0,1,0 | ||
53,1,1,1 | ||
53,0,2,0 | ||
54,0,1,1 | ||
54,1,1,1 | ||
54,0,1,1 | ||
55,0,2,1 | ||
55,1,1,1 | ||
57,0,2,1 | ||
57,0,1,0 | ||
58,0,1,1 | ||
59,0,1,0 | ||
60,0,1,1 | ||
60,0,1,1 | ||
60,0,1,1 | ||
60,0,1,1 | ||
61,0,1,1 | ||
61,0,1,1 | ||
61,1,1,1 | ||
62,0,1,1 | ||
62,1,1,1 | ||
64,0,1,1 | ||
64,0,1,1 | ||
64,0,1,1 | ||
64,1,1,1 | ||
66,1,1,1 | ||
66,0,1,1 | ||
66,0,1,1 | ||
67,0,1,1 | ||
67,0,1,1 | ||
67,1,2,1 | ||
68,0,1,1 | ||
69,1,1,0 | ||
70,1,1,1 | ||
72,1,1,1 | ||
73,0,1,0 | ||
73,1,1,1 | ||
74,0,1,1 | ||
74,0,1,1 | ||
74,1,1,1 | ||
75,0,2,0 | ||
75,1,1,1 | ||
75,1,2,0 | ||
75,1,1,1 | ||
76,1,1,1 | ||
76,0,1,1 | ||
78,0,1,1 | ||
78,0,2,0 | ||
78,1,1,1 | ||
79,1,1,1 | ||
79,0,1,1 | ||
79,0,1,1 | ||
79,0,1,1 | ||
82,0,1,1 | ||
83,1,1,0 | ||
84,1,1,1 | ||
84,1,1,1 | ||
88,1,1,1 | ||
89,0,1,1 | ||
89,0,1,1 | ||
76,1,1,1 | ||
60,1,1,1 | ||
89,1,1,1 | ||
55,0,1,1 | ||
41,1,1,1 | ||
24,0,1,1 | ||
62,0,1,1 | ||
80,0,1,1 | ||
56,0,1,1 | ||
29,0,1,1 | ||
71,0,2,0 | ||
43,0,1,1 | ||
59,0,2,1 | ||
50,0,1,1 | ||
77,0,1,1 | ||
87,1,2,0 | ||
73,0,2,1 | ||
53,1,1,1 | ||
68,1,2,1 | ||
67,0,2,1 | ||
50,0,2,0 | ||
36,0,1,1 | ||
54,0,1,1 | ||
77,0,1,1 | ||
45,1,1,1 | ||
50,1,1,1 | ||
35,0,2,1 | ||
48,0,1,1 | ||
44,0,1,1 | ||
70,0,1,1 | ||
76,0,2,0 | ||
63,0,2,1 | ||
30,0,1,1 | ||
66,1,1,1 | ||
60,0,1,1 | ||
57,0,1,1 | ||
46,1,1,1 | ||
61,1,1,0 | ||
69,0,1,1 | ||
71,0,1,0 | ||
53,0,2,1 | ||
69,0,1,0 | ||
63,0,1,1 | ||
57,1,1,1 | ||
86,0,1,1 | ||
50,0,1,0 | ||
67,0,1,1 | ||
47,0,1,1 | ||
50,0,1,0 | ||
62,0,1,1 | ||
58,0,1,0 | ||
55,1,1,1 |
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,70 @@ | ||
# Sepsis Survival Prediction - Models | ||
|
||
## Models Implemented | ||
|
||
### 1. Random Forest | ||
|
||
**Description**: Random Forest is an ensemble learning method that constructs multiple decision trees during training and outputs the mode of the classes as the prediction. | ||
|
||
### 2. XGBoost | ||
|
||
**Description**: XGBoost is an optimized gradient boosting framework that is highly efficient and scalable, often used for structured data. | ||
|
||
### 3. Logistic Regression | ||
|
||
**Description**: Logistic Regression is a linear model that uses the logistic function to model the probability of a binary class. | ||
|
||
### 4. Gradient Boosting | ||
|
||
**Description**: Gradient Boosting builds models sequentially, with each new model correcting errors made by the previous ones. | ||
|
||
### 5. AdaBoost | ||
|
||
**Description**: AdaBoost is an ensemble learning method that combines multiple weak classifiers to create a strong classifier. | ||
|
||
### 6. CatBoost | ||
|
||
**Description**: CatBoost is a gradient boosting algorithm that handles categorical features automatically and efficiently. | ||
|
||
### 7. LightGBM | ||
|
||
**Description**: LightGBM is a gradient boosting framework designed for efficiency with large datasets and low memory usage. | ||
|
||
### 8. K-Nearest Neighbors (KNN) | ||
|
||
**Description**: K-Nearest Neighbors is a simple, instance-based learning algorithm where classification is based on the majority vote of the nearest neighbors. | ||
|
||
### 9. Support Vector Machine (SVM) | ||
|
||
**Description**: SVM is a supervised learning model that finds the hyperplane which best divides a dataset into classes. | ||
|
||
### 10. Decision Tree | ||
|
||
**Description**: Decision Trees are non-parametric supervised learning methods used for classification based on simple decision rules inferred from the data features. | ||
|
||
## Performance of the Models based on the Accuracy Scores | ||
|
||
- **Random Forest**: 90.92% | ||
- **XGBoost**: 90.92% | ||
- **Logistic Regression**: 90.92% | ||
- **Gradient Boosting**: 90.92% | ||
- **AdaBoost**: 90.92% | ||
- **CatBoost**: 90.93% | ||
- **LightGBM**: 90.92% | ||
- **K-Nearest Neighbors (KNN)**: 90.46% | ||
- **Support Vector Machine (SVM)**: 90.92% | ||
- **Decision Tree**: 90.92% | ||
|
||
Each model was evaluated based on its accuracy in predicting sepsis surval using clinical records. | ||
|
||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___21_0.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_1.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_11.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_13.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_15.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_17.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_19.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_3.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_5.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_7.png?raw=true) | ||
![accuracy plot](https://github.com/adi271001/ML-Crate/blob/sepsis-survival-prediction/Sepsis%20Survival%20Prediction/Images/__results___20_9.png?raw=true) |
Oops, something went wrong.