tiny update

Zilong-Li · Feb 11, 2025 · 40c6771 · 40c6771
1 parent 6bba622
commit 40c6771
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Showing 3 changed files with 4 additions and 6 deletions.
diff --git a/Makefile b/Makefile
@@ -24,7 +24,7 @@ IOMP5         = 0
 
 ########################### end ###########################
 
-VERSION=0.4.9
+VERSION=0.5.0
 # detect OS architecture and add flags
 Platform     := $(shell uname -s)
 
@@ -135,7 +135,7 @@ else ifeq ($(Platform),Darwin)
 		MYFLAGS += -DEIGEN_USE_BLAS
 		INC     += -I${ACCELERATE_ROOT}/include
 		LPATHS  += -L${ACCELERATE_ROOT}/lib
-		DLIBS   += -Wl,-rpath,${ACCELERATE_ROOT}/lib -llapack -lblas -lgomp -lpthread
+		DLIBS   += -Wl,-rpath,${ACCELERATE_ROOT}/lib -llapack -lblas -lpthread
 
 	else
 		DLIBS += -lomp -lpthread -L$(LIB_PATH)

diff --git a/src/Data.cpp b/src/Data.cpp
@@ -171,9 +171,7 @@ void Data::write_eigs_files(const Mat1D &S, const Mat2D &U, const Mat2D &V) {
   std::ofstream outs(params.fileout + ".eigvals");
   std::ofstream outu(params.fileout + ".eigvecs");
   Eigen::IOFormat fmt(6, Eigen::DontAlignCols, "\t", "\n");
-  if (outs.is_open()) {
-    outs << (S * params.ploidy).format(fmt) << '\n';
-  }
+  if (outs.is_open()) outs << (S * params.ploidy).format(fmt) << '\n';
   if (outu.is_open()) outu << U.format(fmt) << '\n';
   if (params.project == 0 && params.printv) {
     save_snps_in_bim();

diff --git a/src/Halko.cpp b/src/Halko.cpp
@@ -173,7 +173,7 @@ void FancyRsvdOpData::computeGandH(Mat2D& G, Mat2D& H, int pi) {
       // blocksize: how many snps in each block
       blocksize = (unsigned int)ceil((double)data->nsnps / data->params.bands);
       if (blocksize < data->params.bands)
-        cao.warn("block size < window size. please consider the IRAM method with --svd 1");
+        cao.warn("block size < window size. please consider the IRAM method with --svd 0");
       if (data->params.perm) {
         cao.print(tick.date(), "permuting data matrix by columns in place");
         PCAone::permute_matrix(data->G, data->perm);