How to generate "pixel_to_clu_ID.tsv" & "clu_ID_to_reg_name.tsv"?

[maximumko]

Hi Zhiliang,

Thank you for the excellent work! I am currently following the "Spatial alternative splicing" section using the dataset GSE274641. While checking the rMATS_pipeline.sh script, I realized I am unsure how to obtain the two mapping files mentioned in the pipeline. Much appreciated for any guidance or hints on this

Best,
Max

[Zhiliang-Bai]

Hi Max,

These two files can be directly output from Seurat after running unsupervised clustering of the gene matrix.

Best,
Zhiliang