- When
logp=FALSE
, SNPs can be annotated if their value from the P column is above the threshold given byannotatePval
, and not below.
- Added "URL" and "BugReports" fields to description.
- Updated vignette.
- Optimizations thanks to XikunHan.
- Minor fix to location to referenced image for pandoc self-contained README.html generation.
- Annotate SNPs below a p-value threshold with the
annotatePval=
option. See vignette for details. - Annotate the top SNP on each chromosome with the
annotateTop=
option. See vignette for details.
- Does not assume that SNPs are evenly distributed across chromosomes when deciding where to place the tick in the center of the chromosome.
- Changed single chromosome x-axis notation to use Mb instead of raw pos
qq()
accepts graphical parameters the same way asmanhattan()
- Removed default
xlim
- Citation details on package load
- Added axis label options
- Removed
ymax
argument in favor of allowing user to setylim
in...
- Option to not take log of p-value
- Fixed a bunch of typos in the vignette