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0.6.0 (TBD)

<0.6.0rc2 - Release message TBD>

  • ENH: Enable anatomical fast track reusing existing derivatives (#107)
  • ENH: Add option to skip brain extraction (#167)
  • MAINT: Update dependencies to be inline with fMRIPrep-20.1.x (#173)

0.5.2 (February 14, 2020)

Minor tweaks in preparation for fMRIPrep 20.0.0 release.

  • ENH: Enable users to pass JSON filters to select subsets of data (#143) @bpinsard
  • MAINT: Add ignore W503 in setup.cfg (#165) @oesteban

0.5.1 (February 7, 2020)

A hotfix release updating dependencies

  • PIN: Nibabel 3.0.1 and niworkflows 1.1.6 (#166) @mgxd

0.5.0 (February 6, 2020)

A new minor release with a focus on improving internal handling and representations of spatial references.

  • RF: Update Spaces objects (#164) @mgxd
  • ENH: Fix template keys output in normalization workflow, when cohort present (#163) @oesteban
  • ENH: Integrate new infrastructure in NiWorkflows to handle spatial references (#159) @mgxd
  • FIX: Improvements to the CircleCI workflow (#162) @oesteban
  • CI: Update coverage (#156) @effigies

0.4.2 (January 22, 2020)

Bugfix release in the 0.4.x series.

  • FIX: Calculate FoV with shape and zooms (#161) @effigies
  • FIX: Package version incorrect within Docker image (#155) @oesteban
  • ENH: Add smriprep.__main__ to allow python -m smriprep (#158) @effigies
  • MAINT: Revise CircleCI to optimize TemplateFlow and caching (#157) @oesteban

0.4.1 (Decemeber 12, 2019)

Bugfix release to address some fMRIPrep issues.

  • FIX: Use T2/FLAIR refinement at cortribbon stage (#148) @effigies
  • FIX: empty specs for legacy/nonstd spaces (#146) @mgxd
  • DOC: Refactor of documentation (#144) @oesteban

0.4.0 (November 26, 2019)

A new 0.4.x series with a number of new features and bugfixes.

  • FIX: Allow setting nonstandard spaces for parser (#141) @oesteban
  • FIX: Normalization workflow API - provide bare template names (#139) @oesteban
  • FIX: Build smriprep-docker like fmriprep-docker (#138) @oesteban
  • FIX: Check template identifiers are valid early (#135) @oesteban
  • FIX: Re-organize FreeSurfer stages to avoid duplication and races (#117) @effigies
  • FIX: Revise naming of transforms when several T1w images are averaged (#106) @oesteban
  • FIX: Allow setting nonstandard spaces for parser (#141) @oesteban
  • ENH: Add --fs-subjects-dir flag (#114) @effigies
  • ENH: Add smriprep-docker wrapper (#118) @effigies
  • ENH: Add a README.rst (#103) @oesteban
  • ENH: Decoupling anatomical reports (#112) @oesteban
  • ENH: Reduce friction when iterating over target templates (#111) @oesteban
  • ENH: Write out the fsnative-to-T1w transform (#113) @oesteban
  • DOC: Minimal refactor preparing release (#140) @oesteban
  • DOC: Revise numpy docstrings so they are correctly rendered (#134) @oesteban
  • DOC: Deploy docs to gh-pages from CircleCI - with versioning (#65) @rwblair
  • CI: Optimize CircleCI using a local docker registry instead docker save/load (#136) @oesteban
  • CI: Run pytests on Python 3.7 for now (#133) @effigies
  • CI: Fix packaging test (#115) @effigies
  • CI: Test packaging and update deploy_pypi step (#119) @effigies
  • MAINT: Fine-tune versioning extension of sphinx (#121) @oesteban
  • MAINT: Refactoring inputs/outputs names and some stylistic changes (#108) @oesteban
  • MAINT: Resolve issues with working directory of ds005 on CircleCI (#110) @oesteban
  • PIN: niworkflows ~= 1.0.0rc1

0.3.2 (September 9, 2019)

Bugfix patch-release

  • FIX: Render INU-corrected T1w in Segmentation reportlet (#102) @oesteban

0.3.1 (July 21, 2019)

Minor release to update pinnings of niworkflows and TemplateFlow client.

  • PIN: niworkflows-0.10.1 and templateflow-0.4.1
  • CI: Fix PyPI deployment (#99) @effigies

0.3.0 (July 12, 2019)

Minor release to allow dependent tools to upgrade to PyBIDS 0.9 series (minimum 0.9.2). We've also moved to a setup.cfg-based setup to standardize configuration.

  • MAINT: Move to setup.cfg + pyproject.toml (#98) @effigies
  • MAINT: Use PyBIDS 0.9.x via niworkflows PR (#94) @effigies

0.2.4 (July 9, 2019)

Several minor improvements on TemplateFlow integration.

  • ENH: Use proper resolution in anatomical outputs (#92) @oesteban
  • ENH: Indicate what templates were not found in TemplateFlow (#91) @oesteban
  • ENH: Pass template specs on to registration workflow (#90) @oesteban

0.2.3 (June 5, 2019)

Enable CLI to set pediatric and infant templates for skull-stripping.

  • ENH: Allow template modifiers (a la --output-spaces) in skull-stripping (#89) @oesteban

0.2.2 (June 5, 2019)

Enable latest templates added to TemplateFlow.

  • PIN: templateflow-0.3.0, which includes infant/pediatric templates (#88) @oesteban

0.2.1 (May 6, 2019)

Hotfix release improving the reliability of the brain extraction workflow.

  • FIX: Keep header consistency along anatomical workflow (#83) @oesteban

0.2.0 (May 3, 2019)

This new release of sMRIPrep adds the possibility of specifying several spatial normalization targets via the --output-spaces option drafted in poldracklab/fmriprep#1588.

  • FIX: Resolve behavior when deprecated --template is given (#77) @oesteban
  • FIX: Solved problems in report generation (#76) @oesteban
  • ENH: Force compression of derivative NIfTI volumes (#80) @effigies
  • ENH: Pull list of spatial normalization templates from TemplateFlow (#68) @oesteban
  • ENH: CLI uses pathlib.Path when possible (#73) @oesteban
  • ENH: Create a spatial normalization workflow (#72) @oesteban
  • ENH: Several improvements over the new spatial normalization workflow (#74) @oesteban
  • ENH: Support for multiple --output-spaces (#75) @oesteban
  • DOC/STY: Fix documentation build, simplify (non)parametric output nodes (#79) @oesteban

0.1.1 (March 22, 2019)

  • ENH: Pure Nipype brain extraction workflow (#57) @oesteban
  • ENH: Write metadata for anatomical outputs (#62) @oesteban

0.1.0 (March 05, 2019)

  • PIN: Niworkflows 0.8 and TemplateFlow 0.1 (#56) @oesteban

0.0.5 (February 06, 2019)

0.0.4 (January 25, 2019)

  • ENH: Allow templates other than MNI152NLin2009cAsym (#47) @oesteban
  • DOC: Fix workflow hierarchy within docstrings so that fMRIPrep docs build (0110ab2).

0.0.3 (January 18, 2019)

  • FIX: Add -cw256 flag for images with FoV > 256 voxels (#36) @oesteban
  • ENH: Integrate TemplateFlow to handle templates (#45) @oesteban

0.0.2 (January 8, 2019)

  • First functional version after forking from fMRIPrep