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clarified the group order and body parts in readme in bsoid_figs/exam…
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runninghsus committed Feb 9, 2021
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19 changes: 19 additions & 0 deletions bsoid_figs/examples/README.md
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Expand Up @@ -84,6 +84,10 @@ This also converts pixels to centimeters with a scale of 23.5126 pixels/cm

##### Any two pair distances bottom up camera
##### Points 1 to 6 are: Snout; right forepaw; left forepaw; right hindpaw; left hindpaw; tail-base
##### Each row is representing each behavior, ordered as above gifs, with the first row being the
##### remaining non-clusterable noise data points that the random forest classifier was not trained on.

<p align="center">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships/['distance between points:', 1, 2]_histogram.png" width="300">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships/['distance between points:', 1, 3]_histogram.png" width="300">
Expand All @@ -103,6 +107,9 @@ This also converts pixels to centimeters with a scale of 23.5126 pixels/cm
</p>

##### Angular change in any two pair distances over time
##### Points 1 to 6 are: Snout; right forepaw; left forepaw; right hindpaw; left hindpaw; tail-base
##### Each row is representing each behavior, ordered as above gifs, with the first row being the
##### remaining non-clusterable noise data points that the random forest classifier was not trained on.
<p align="center">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships/['angular change for points:', 1, 2]_histogram.png" width="300">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships/['angular change for points:', 1, 3]_histogram.png" width="300">
Expand All @@ -122,6 +129,9 @@ This also converts pixels to centimeters with a scale of 23.5126 pixels/cm
</p>

##### Displacement in single pose over time
##### Points 1 to 6 are: Snout; right forepaw; left forepaw; right hindpaw; left hindpaw; tail-base
##### Each row is representing each behavior, ordered as above gifs, with the first row being the
##### remaining non-clusterable noise data points that the random forest classifier was not trained on.
<p align="center">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships/['displacement for point:', 1, 1]_histogram.png" width="300">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships/['displacement for point:', 2, 2]_histogram.png" width="300">
Expand All @@ -140,6 +150,9 @@ This also converts pixels to centimeters with a scale of 14.7553 pixels/cm
-r, order, -m, fig_format, -o, outpath`

##### Any two pair distances top down camera
##### Points 1 to 6 are: Snout; right shoulder; left shoulder; right hip; left hip; tail-base
##### Each row is representing each behavior, specified in manuscript, with the first row being the
##### remaining non-clusterable noise data points that the random forest classifier was not trained on.
<p align="center">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships_topdown/openfield_60min_N1_['distance between points:', 1, 2]_histogram.png" width="300">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships_topdown/openfield_60min_N1_['distance between points:', 1, 3]_histogram.png" width="300">
Expand All @@ -159,6 +172,9 @@ This also converts pixels to centimeters with a scale of 14.7553 pixels/cm
</p>

##### Angular change in any two pair distances over time
##### Points 1 to 6 are: Snout; right shoulder; left shoulder; right hip; left hip; tail-base
##### Each row is representing each behavior, specified in manuscript, with the first row being the
##### remaining non-clusterable noise data points that the random forest classifier was not trained on.
<p align="center">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships_topdown/openfield_60min_N1_['angular change for points:', 1, 2]_histogram.png" width="300">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships_topdown/openfield_60min_N1_['angular change for points:', 1, 3]_histogram.png" width="300">
Expand All @@ -178,6 +194,9 @@ This also converts pixels to centimeters with a scale of 14.7553 pixels/cm
</p>

##### Displacement in single pose over time
##### Points 1 to 6 are: Snout; right shoulder; left shoulder; right hip; left hip; tail-base
##### Each row is representing each behavior, specified in manuscript, with the first row being the
##### remaining non-clusterable noise data points that the random forest classifier was not trained on.
<p align="center">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships_topdown/openfield_60min_N1_['displacement for point:', 1, 1]_histogram.png" width="300">
<img src="https://github.com/runninghsus/bsoid_figs/blob/main/examples/pose_relationships_topdown/openfield_60min_N1_['displacement for point:', 2, 2]_histogram.png" width="300">
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