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Copy pathDiseaseSTR_v1.1.bed
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DiseaseSTR_v1.1.bed
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Chrom ChromStart ChromEnd Name Repeat_unit_length Motif Ref_hap_length Ref_allele Stutter_ratio_threshold Ploidy Inner_offset
chr1 1435798 1435818 HMN:VWA1 10 [GGCGCGGAGC]n 20 2 0.25 2 0
chr1 57367043 57367118 SCA37:DAB1 5 [AAAAT]n [GAAAT]n 75 15 0.25 2 0
chr1 149390802 149390829 NIID;ETM6:NOTCH2NLC 3 [GGC]n 27 9 0.25 2 0
chr2 96197066 96197121 FAME2:STARD7 5 [AAAAT]n [AAATG]n 55 11 0.25 2 0
chr2 176093058 176093103 SPD1:HOXD13 3 [GCN]n 39 13 0.25 2 0
chr2 190880872 190880920 GDPAG:GLS 3 [GCA]n 48 16 0.25 2 0
chr3 63912685 63912715 SCA7:ATXN7 3 [CAG]n 30 10 0.25 2 0
chr3 129172576 129172656 DM2:CNBP 4 [CAGG]n 80 20 0.25 2 0
chr3 138946020 138946062 BPES:FOXL2 3 [NGC]n 42 14 0.25 2 0
chr3 183712187 183712222 FAME4:YEATS2 5 [TTTTA]n [TTTCA]n 35 7 0.25 2 0
chr4 3074876 3074933 HD:HTT 3 [CAG]n 57 19 0.25 2 0
chr4 39348424 39348485 CANVAS:RFC1 5 [AAAAG]n [AAAGG]n [AAGGG]n [AAGGG]n [ACAGG]n 61 12 0.25 2 0
chr4 41745971 41746031 CCHS:PHOX2B 3 [NGC]n 60 20 0.25 2 0
chr4 159342526 159342616 FAME7:RAPGEF2 5 [TTTTA]n [TTTCA]n 90 18 0.25 2 0
chr5 10356347 10356407 FAME3:MARCHF6 5 [TTTTA]n [TTTCA]n 60 12 0.25 2 0
chr5 146878728 146878758 SCA12:PPP2R2B 3 [CTG]n 30 10 0.25 2 0
chr6 16327635 16327722 SCA1:ATXN1 3 [CTG]n 87 29 0.25 2 0
chr6 45422750 45422801 CCD:RUNX2 3 [GCN]n 51 17 0.25 2 0
chr6 170561907 170562015 SCA17:TBP 3 [CAG]n 108 36 0.25 2 0
chr7 27199924 27199966 HFG:HOXA13:1 3 [NGC]n 42 14 0.25 2 0
chr7 27199825 27199861 HFG:HOXA13:2 3 [NGC]n 36 12 0.25 2 0
chr7 27199678 27199732 HFG:HOXA13:3 3 [NGC]n 54 18 0.25 2 0
chr8 104588972 104588999 OPDM1:LRP12 3 [CCG]n 27 9 0.25 2 0
chr8 118366815 118366913 FAME1:SAMD12 5 [TAAAA]n [TTTCA]n 98 20 0.25 2 0
chr9 27573528 27573546 FTDALS1:C9ORF72 6 [GGGGCC]n 18 3 0.25 2 0
chr9 69037286 69037304 FRDA:FXN 3 [GAA]n 18 3 0.25 2 0
chr9 130681606 130681639 HSAN8:PRDM12 3 [GCC]n 33 11 0.25 2 0
chr10 79826377 79826403 OPML1:NUTM2B-AS1 3 [CGG]n 26 8 0.25 2 0
chr11 119206289 119206322 JBS:CBL 3 [CGG]n 33 11 0.25 2 0
chr12 6936728 6936773 DRPLA:ATN1 3 [CAG]n 45 15 0.25 2 0
chr12 50505003 50505024 MRFRA12A:DIP2B 3 [CGG]n 21 7 0.25 2 0
chr12 111598950 111599019 SCA2:ATXN2 3 [CTG]n 69 23 0.25 2 0
chr12 123533720 123533750 OPDM4:RILPL1 3 [GGC]n 30 10 0.25 2 0
chr13 70139383 70139428 SCA8:ATXN8OS 3 [CTG]n 45 15 0.25 2 0
chr13 99985448 99985493 HPE5:ZIC2 3 [GCN]n 45 15 0.25 2 0
chr13 102161576 102161726 SCA50:FGF14 3 [GAA]n 150 50 0.25 2 0
chr14 23321472 23321490 OPMD:PABPN1 3 [GCG]n 18 6 0.25 2 0
chr14 92071010 92071040 SCA3:ATXN3 3 [CTG]n 30 10 0.25 2 0
chr15 22786677 22786701 ALS:NIPA1 3 [GCG]n 24 8 0.25 2 0
chr16 17470907 17470922 DBQD2:XYLT1 3 [GCC]n 15 5 0.25 2 0
chr16 24613439 24613529 FAME6:TNRC6A 5 [TTTTA]n [TTTCA]n 90 18 0.25 2 0
chr16 66490398 66490466 SCA31:BEAN1 5 [TNNAA]n 68 13 0.25 2 0
chr16 87604287 87604329 HDL2:JPH3 3 [CTG]n 42 14 0.25 2 0
chr18 55586155 55586227 FECD3:TCF4 3 [CAG]n 72 24 0.25 2 0
chr19 13207858 13207897 SCA6:CACNA1A 3 [CTG]n 39 13 0.25 2 0
chr19 14496041 14496074 OPDM2:GIPC1 3 [CCG]n 33 11 0.25 2 0
chr19 18786034 18786049 EDM1;PSACH:COMP 3 [GTC]n 15 5 0.25 2 0
chr19 45770204 45770264 DM1:DMPK 3 [CAG]n 60 20 0.25 2 0
chr20 2652733 2652757 SCA36:NOP56 6 [GGCCTG]n 24 4 0.25 2 0
chr21 43776443 43776479 ULD:CSTB 12 [CGCGGGGCGGGG]n 36 3 0.25 2 0
chr22 19766762 19766807 TOF:TBX1 3 [GCN]n 45 15 0.25 2 0
chr22 45795354 45795424 SCA10:ATXN10 5 [ATTCT]n 70 14 0.25 2 0
chrX 25013649 25013697 DEE1;MRXARX:ARX_1 3 [NGC]n 48 16 0.25 2 0
chrX 25013529 25013565 DEE1;MRXARX;PRTS:ARX_2 3 [NGC]n 36 12 0.25 2 0
chrX 31284557 31284605 DMD:DMD 3 [TTC]n 48 16 0.25 2 0
chrX 67545316 67545385 SBMA:AR 3 [GCA]n 69 23 0.25 2 0
chrX 137566826 137566856 VACTERLX:ZIC3 3 [GCC]n 30 10 0.25 2 0
chrX 140504316 140504361 XLMR;PHPX:SOX3 3 [NGC]n 45 15 0.25 2 0
chrX 147912050 147912110 FXTAS;FXS:FMR1 3 [CGG]n 60 20 0.25 2 0
chrX 148500638 148500683 FRAXE:AFF2 3 [CCG]n 45 15 0.25 2 0