ion_baseq

Usage

perl check_ion_fq_base_quality.pl <*.fastq> >out.txt

Example

perl check_ion_fq_base_quality.pl none_IonXpress_085_R_2022_03_10_17_29_05_user_GSS5PR-0070-144-ludaopei-530chip2_Auto_user_GSS5PR-0070-144-ludaopei-530chip2_502_tn.fastq >baseq.stat.txt

baseq.stat.txt

reads_num: 2529
base quality distribution:
1       185
2       316
3       275
4       255
5       623
6       793
7       3018
8       3054
9       1759
10      1599
11      2803
12      5418
13      6236
14      15540
15      7448
16      3777
17      7063
18      9499
19      6458
20      16948
21      13738
22      18400
23      26598
24      32192
25      33768
26      44991
27      29193
28      43297
29      50122
30      56016
31      66162
32      69993
33      96707
34      59416
35      14550
36      3445
37      1797
38      1114
39      375
40      285
41      207
42      112
43      92
44      51