Summary Ion AmpliSeq SARS-CoV-2 Insight Research results into one xls file.

Output file header line

建库日期 : chefDate
测序日期 : seqDate
expName : expName
报告名称 : reportName
芯片类型 : chipType 
Barcode : Barcode
样本名 : sampleName
Pangolin分型 : Pangolin
Nextclade分型 : Nextclade
样本数据量 : totalReads
均一性 : Uniformity
组装N比例 : consensusN
TVC变异位点个数 : tvcVarNum
一致性序列变异位点个数 : consVarNum
一致性序列杂合SNP个数 : consHetSnpNum
Reads平均长度 : readMeanLength
平均测序深度 : meanDepth
Pool1-Mean Reads per Amplicon : Pool1-Mean Reads per Amplicon
Pool2-Mean Reads per Amplicon : Pool2-Mean Reads per Amplicon
是否提交 : ifSubmit
提交日期 : submitDate
备注 : Note

chefDate	seqDate	expName	reportName	chipType	Barcode	sampleName	Pangolin	Nextclade	totalReads	Uniformity	consensusN	tvcVarNum	consVarNum	consHetSnpNum	readMeanLength	meanDepth	Pool1-Mean Reads per Amplicon	Pool2-Mean Reads per Amplicon	ifSubmit	submitDate	Note
NA	NA	R_2020_01_20_09_37_25_user_GSS5PR-0070-71-20200117-Ampliseq_Flu	2019-nCoV-map2hg19-exon-virus_241	510	IonXpress_001	001 FluB	B.1.617.2	NA	NA	NA	0.4264	49	49	0	NA	NA	28293	25927	NA	NA	NA
NA	NA	R_2020_01_20_09_37_25_user_GSS5PR-0070-71-20200117-Ampliseq_Flu	2019-nCoV-map2hg19-exon-virus_241	510	IonXpress_003	002 FluB	B.1.617.2	NA	NA	NA	0.3021	45	49	0	NA	NA	3	2	NA	NA	NA

Plugin example

SARS_CoV_2_coverageAnalysis_out.1212 means that in this run, ReportSummary_2019nCoV_out.1868, the SARS_CoV_2_coverageAnalysis_out.1212 results were used.