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environment.yml
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name: PhaseFinder
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- bedops=2.4.41=h4ac6f70_1
- bedtools=2.31.0=hf5e1c6e_2
- biopython=1.81=py310h1fa729e_0
- bowtie=1.3.1=py310h7b97f60_6
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- emboss=6.6.0=hdde3b0b_7
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- giflib=5.2.1=h0b41bf4_3
- htslib=1.17=h81da01d_2
- icu=72.1=hcb278e6_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.1=h659d440_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=17_linux64_openblas
- libcblas=3.9.0=17_linux64_openblas
- libcurl=8.2.1=hca28451_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.1.0=he5830b7_0
- libgd=2.3.3=hfa28ad5_6
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libgomp=13.1.0=he5830b7_0
- libhwloc=2.9.2=nocuda_h7313eea_1008
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=17_linux64_openblas
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.23=pthreads_h80387f5_0
- libpng=1.6.39=h753d276_0
- libsqlite=3.42.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libtiff=4.5.1=h8b53f26_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.3.1=hbf2b3c1_0
- libwebp-base=1.3.1=hd590300_0
- libxml2=2.11.4=h0d562d8_0
- libzlib=1.2.13=hd590300_5
- ncurses=6.4=hcb278e6_0
- numpy=1.25.1=py310ha4c1d20_0
- openssl=3.1.1=hd590300_1
- pandas=2.0.3=py310h7cbd5c2_1
- perl=5.32.1=4_hd590300_perl5
- pip=23.2.1=pyhd8ed1ab_0
- python=3.10.12=hd12c33a_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2023.3=pyhd8ed1ab_0
- readline=8.2=h8228510_1
- rocm-smi=5.6.0=h59595ed_1
- samtools=1.17=hd87286a_1
- setuptools=68.0.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- tbb=2021.10.0=h00ab1b0_0
- tk=8.6.12=h27826a3_0
- tzdata=2023c=h71feb2d_0
- wheel=0.41.0=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.2=hfc55251_7