Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use '::' to specify a group path" #25

Open
bam-13 opened this issue Dec 27, 2023 · 3 comments
Open

Use '::' to specify a group path" #25

bam-13 opened this issue Dec 27, 2023 · 3 comments

Comments

@bam-13
Copy link

bam-13 commented Dec 27, 2023

image
I have successfully obtained hitad, but I encountered this problem when I was visualizing. I don't know what caused it, could you please help me to solve it.

@XiaoTaoWang
Copy link
Owner

Hi, since the chromatin contacts seem to be stored in a single-resolution cool file in your case, you need to directly pass the file path "/store/zlzhang/hic_data/12_13paper_data/Rao_2017/GSE104333_Rao-2017-treated_6hr_combined_30-10k_10000.cool" to Triangle, rather than "/store/zlzhang/hic_data/12_13paper_data/Rao_2017/GSE104333_Rao-2017-treated_6hr_combined_30-10k_10000.cool::10000".

@bam-13
Copy link
Author

bam-13 commented Dec 27, 2023

Thank you for your answer, but I still have the following problem according to your suggestion. I set balance=False, which prompts: TypeError: init() got an unexpected keyword argument 'balance'
image

@XiaoTaoWang
Copy link
Owner

well, then you may need to run cooler balance your_coolfile.cool first

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants