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Program error with output #12
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I forgot to mention that in my log file I get the following error Traceback (most recent call last): |
I am also having the same issue. Were you able to figure out? |
Nope. I ended up using Juicer tools to generate a matrix and call TADs.
Works much better!
…On Sun, Dec 15, 2019 at 5:05 PM AyushSemwal ***@***.***> wrote:
I am also having the same issue. Were you able to figure out?
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Upon running hitad, I get the following text. My input command is [ hitad --output test_50000.txt -d meta_file_50kb --logFile hitad.log ]. Although the prompt gives a 'done' message, there is no output file and I don't think that the program even proceeds with the TAD parsing.
root INFO @ 10/17/19 18:16:14:
ARGUMENT LIST:
Output file name = test_50000.txt
Hi-C datasets = {500000: {'rep1': '/scratch/network/dtandon/HiCLiver2/SRR17.output_50000.cool'}}
Column for matrix balancing = weight
Excluded chromosomes = ['chrY', 'chrM']
Maximum domain size = 4000000
Column for DI track = DIs
Number of processes used = 1
Remove cache data = False
Log file name = hitad.log
root INFO @ 10/17/19 18:16:16: Parsing Hi-C datasets ...
root INFO @ 10/17/19 21:01:05: Done!
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