nohup.out

        V1        V2
1: 1 chr10 100000197
2: 1 chr10   1000003
3: 1 chr10 100000882
4: 1 chr10 100001144
5: 1 chr10 100001207
6: 1 chr10 100001351

   chr1   chr10   chr11   chr12   chr13   chr14   chr15   chr16   chr17   chr18 
1408315  862770  879474  830249  793036  582788  448620  511916  351106  649165 
  chr19    chr2   chr20   chr21   chr22    chr3    chr4    chr5    chr6    chr7 
 224719 1738110  449763  253948  150612 1412800 1455126 1343289 1105089 1124034 
   chr8    chr9    chrX 
1250319  665203  641211 
Classes ‘data.table’ and 'data.frame':	6 obs. of  5 variables:
 $ chr  : chr  "chr1" "chr10" "chr1" "chr1" ...
 $ start: int  66156917 95147027 2875298 4774996 5530761 7001005
 $ end  : int  66156917 95147027 2875298 4774996 5530761 7001005
 $ prob : num  0.428 0.271 0.4 0.457 0.4 ...
 $ donor: chr  "DO162" "DO162" "DO221117" "DO221117" ...
 - attr(*, ".internal.selfref")=<externalptr> 
     chr    start      end  i.start    i.end      prob    donor
1: chr12 64747252 64747262 64747257 64747257 0.2324361 DO221117
2: chr16 10972014 10972024 10972019 10972019 0.4659293 DO221117
3: chr16 10973097 10973107 10973102 10973102 0.4833699 DO221117
4: chr16 59581004 59581014 59581009 59581009 0.7351734 DO221117
5: chr18 60984914 60984924 60984918 60984918 0.4230864 DO221117
6: chr18 60984916 60984926 60984918 60984918 0.4230864 DO221117
     chr    start      end      prob    donor region_midpoint      mut_index
1: chr12 64747252 64747262 0.2324361 DO221117  chr12:64747257 chr12:64747257
2: chr16 10972014 10972024 0.4659293 DO221117  chr16:10972019 chr16:10972019
3: chr16 10973097 10973107 0.4833699 DO221117  chr16:10973102 chr16:10973102
4: chr16 59581004 59581014 0.7351734 DO221117  chr16:59581009 chr16:59581009
5: chr18 60984914 60984924 0.4230864 DO221117  chr18:60984919 chr18:60984918
6: chr18 60984916 60984926 0.4230864 DO221117  chr18:60984921 chr18:60984918
Error in unique(freq) : object 'freq' not found
Calls: [ -> [.data.table -> <Anonymous> -> unique
Execution halted