This repo contains all the analyses for our manuscript Analysis of an allelic series using transcriptomic phenotypes.
The folder structure is as follows:
docs - Files for building the website
input - Contains most of the required inputs into the supplementary.
The exception are the processed Sleuth files.
output - Figures output from running the code
kallisto - Contains the processed TPM files and run information that was input into Sleuth.
NOTE: The kallisto files contain a lot of extraneous RNA-seq data to this project,
which was used to perform accurate batch corrections and improve statistical power
sleuth - Contains the necessary scripts and input information to run Sleuth.
- sleuth_strains - This folder contains the output from running sleuth
tex - Everything that is required to assemble the final manuscript.
useful_notes - Some notes on Ras biology
Feel free to contact dangeles@caltech.edu or pws@caltech.edu if you have questions pertaining to this repository.