v2.1.12

What's Changed

• Adding wrappers for owl (owlery) and cypher (pdb/neo4j) queries by @Robbie1977 in #148
• minor fixes and transcriptomic profile formatting by @Robbie1977 in #149

Full Changelog: v2.0.2...v2.1.12

v2.1.11

What's New in This Release

1. New VFBTerm and VFBTerms Objects:

   • Introduced vfb.term (a VFBTerm object) and vfb.terms (a list of VFBTerm objects), enabling lazy loading of data.
   • Full integration with image loading and display via Navis tools:
     • Display 3D plots: terms.plot3d()
     • Show thumbnails: term.show()
     • Open on Virtual Fly Brain (VFB) website: terms.open(), term.open()
     • Get a summary as a Pandas DataFrame: terms.get_summaries(), term.summary

2. Enhanced Data Features:

   • Added subtypes and subparts, along with combined children parameters.
   • Introduced morphological similarity scores and potential driver results.
   • Added downstream_partners and upstream_partners attributes to VFBTerm.

3. New Plotting and Visualization Options:

   • Draft functionality for plotting by type or connectivity.
   • Added include_template option for plots.
   • Merged thumbnail view available via VFBTerms.show().

4. Logical Operations and Comparisons:

   • Added a full set of logical operations and comparison methods.

5. New Query Capabilities:

   • scRNAseq queries.
   • transgene expression
   • lineage clone
   • lineage ref

6. Minor Enhancements and Bug Fixes:

   • Direct cross-references (xrefs) can now be used to create term(s).
   • Various minor fixes and improvements.
   • More updates and enhancements to the documentation.
   • fix for xref with spaces in db prefix (symbols for DB refs are coming)
   • typo fix from v2.1.10

Full Changelog: v2.0.2...v2.1.11

v2.1.10

What's New in This Release

1. New VFBTerm and VFBTerms Objects:

   • Introduced vfb.term (a VFBTerm object) and vfb.terms (a list of VFBTerm objects), enabling lazy loading of data.
   • Full integration with image loading and display via Navis tools:
     • Display 3D plots: terms.plot3d()
     • Show thumbnails: term.show()
     • Open on Virtual Fly Brain (VFB) website: terms.open(), term.open()
     • Get a summary as a Pandas DataFrame: terms.get_summaries(), term.summary

2. Enhanced Data Features:

   • Added subtypes and subparts, along with combined children parameters.
   • Introduced morphological similarity scores and potential driver results.
   • Added downstream_partners and upstream_partners attributes to VFBTerm.

3. New Plotting and Visualization Options:

   • Draft functionality for plotting by type or connectivity.
   • Added include_template option for plots.
   • Merged thumbnail view available via VFBTerms.show().

4. Logical Operations and Comparisons:

   • Added a full set of logical operations and comparison methods.

5. New Query Capabilities:

   • scRNAseq queries.
   • transgene expression
   • lineage clone
   • lineage ref

6. Minor Enhancements and Bug Fixes:

   • Direct cross-references (xrefs) can now be used to create term(s).
   • Various minor fixes and improvements.
   • More updates and enhancements to the documentation.
   • fix for xref with spaces in db prefix (symbols for DB refs are coming)

Full Changelog: v2.0.2...v2.1.10

v2.1.9

What's New in This Release

1. New VFBTerm and VFBTerms Objects:

   • Introduced vfb.term (a VFBTerm object) and vfb.terms (a list of VFBTerm objects), enabling lazy loading of data.
   • Full integration with image loading and display via Navis tools:
     • Display 3D plots: terms.plot3d()
     • Show thumbnails: term.show()
     • Open on Virtual Fly Brain (VFB) website: terms.open(), term.open()
     • Get a summary as a Pandas DataFrame: terms.get_summaries(), term.summary

2. Enhanced Data Features:

   • Added subtypes and subparts, along with combined children parameters.
   • Introduced morphological similarity scores and potential driver results.
   • Added downstream_partners and upstream_partners attributes to VFBTerm.

3. New Plotting and Visualization Options:

   • Draft functionality for plotting by type or connectivity.
   • Added include_template option for plots.
   • Merged thumbnail view available via VFBTerms.show().

4. Logical Operations and Comparisons:

   • Added a full set of logical operations and comparison methods.

5. New Query Capabilities:

   • scRNAseq queries.
   • transgene expression
   • lineage clone
   • lineage ref

6. Minor Enhancements and Bug Fixes:

   • Direct cross-references (xrefs) can now be used to create term(s).
   • Various minor fixes and improvements.
   • More updates and enhancements to the documentation.

Full Changelog: v2.0.2...v2.1.9

v2.1.8

What's New in This Release

1. New VFBTerm and VFBTerms Objects:

   • Introduced vfb.term (a VFBTerm object) and vfb.terms (a list of VFBTerm objects), enabling lazy loading of data.
   • Full integration with image loading and display via Navis tools:
     • Display 3D plots: terms.plot3d()
     • Show thumbnails: term.show()
     • Open on Virtual Fly Brain (VFB) website: terms.open(), term.open()
     • Get a summary as a Pandas DataFrame: terms.get_summaries(), term.summary

2. Enhanced Data Features:

   • Added subtypes and subparts, along with combined children parameters.
   • Introduced morphological similarity scores and potential driver results.
   • Added downstream_partners and upstream_partners attributes to VFBTerm.

3. New Plotting and Visualization Options:

   • Draft functionality for plotting by type or connectivity.
   • Added include_template option for plots.
   • Merged thumbnail view available via VFBTerms.show().

4. Logical Operations and Comparisons:

   • Added a full set of logical operations and comparison methods.

5. New Query Capabilities:

   • Added support for scRNAseq queries.

6. Minor Enhancements and Bug Fixes:

   • Direct cross-references (xrefs) can now be used to create term(s).
   • Various minor fixes and improvements.
   • More updates and enhancements to the documentation.

Full Changelog: v2.0.2...v2.1.8

v2.1.7

What's New in This Release

1. New VFBTerm and VFBTerms Objects:

   • Introduced vfb.term (a VFBTerm object) and vfb.terms (a list of VFBTerm objects), enabling lazy loading of data.
   • Full integration with image loading and display via Navis tools:
     • Display 3D plots: terms.plot3d()
     • Show thumbnails: term.show()
     • Open on Virtual Fly Brain (VFB) website: terms.open(), term.open()
     • Get a summary as a Pandas DataFrame: terms.get_summaries(), term.summary

2. Enhanced Data Features:

   • Added subtypes and subparts, along with combined children parameters.
   • Introduced morphological similarity scores and potential driver results.
   • Added downstream_partners and upstream_partners attributes to VFBTerm.

3. New Plotting and Visualization Options:

   • Draft functionality for plotting by type or connectivity.
   • Added include_template option for plots.
   • Merged thumbnail view available via VFBTerms.show().

4. Logical Operations and Comparisons:

   • Added a full set of logical operations and comparison methods.

5. New Query Capabilities:

   • Added support for scRNAseq queries.

6. Minor Enhancements and Bug Fixes:

   • Direct cross-references (xrefs) can now be used to create term(s).
   • Various minor fixes and improvements.
   • More updates and enhancements to the documentation.

Full Changelog: v2.0.2...v2.1.7

v2.1.6

What's New
We are introducing a new vfb.term (VFBTerm object) and vfb.terms (VFBTerms list of VFBTerm) which enable Lazy loading of data and full integration of image loading and display via Navis tools e.g. terms.plot3d()
show thumbnails term.show()
open on VFB website: terms.open() term.open()
get a summary as a pandas dataframe: terms.get_summaries() term.summary
Added subtypes and subparts as well as combined children parameters
Added morphological similarity scores and potential driver results.
Added downstream_partners and upstream_partners to VFBTerm
Draft for plot by type or connectivity
minor fixes
direct xref can be used to create term(s)
add include_template option on plots
Added a full set of logical operations and comparisons
More fixes and improvements to the documentation
Added merged thumbnail via VFBTerms.show()

Full Changelog: v2.0.2...v2.1.6

v2.1.5

What's New
We are introducing a new vfb.term (VFBTerm object) and vfb.terms (VFBTerms list of VFBTerm) which enable Lazy loading of data and full integration of image loading and display via Navis tools e.g. terms.plot3d()
show thumbnails term.show()
open on VFB website: terms.open() term.open()
get a summary as a pandas dataframe: terms.get_summaries() term.summary
Added subtypes and subparts as well as combined children parameters
Added morphological similarity scores and potential driver results.
Added downstream_partners and upstream_partners to VFBTerm
Draft for plot by type or connectivity
minor fixes
direct xref can be used to create term(s)
add include_template option on plots
Added a full set of logical operations and comparisons
More fixes and improvements to the documentation

Full Changelog: v2.0.2...v2.1.5

v2.1.4

What's New
We are introducing a new vfb.term (VFBTerm object) and vfb.terms (VFBTerms list of VFBTerm) which enable Lazy loading of data and full integration of image loading and display via Navis tools e.g. terms.plot3d()
show thumbnails term.show()
open on VFB website: terms.open() term.open()
get a summary as a pandas dataframe: terms.get_summaries() term.summary
Added subtypes and subparts as well as combined children parameters
Added morphological similarity scores and potential driver results.
Added downstream_partners and upstream_partners to VFBTerm
Draft for plot by type or connectivity
minor fixes
direct xref use to create term(s)
add include_template option on plots
Added full set of logical operations and comparisons
improved documentation

Full Changelog: v2.0.2...v2.1.4

v2.1.3

What's New
We are introducing a new vfb.term (VFBTerm object) and vfb.terms (VFBTerms list of VFBTerm) which enable Lazy loading of data and full integration of image loading and display via Navis tools e.g. terms.plot3d()
show thumbnails term.show()
open on VFB website: terms.open() term.open()
get a summary as a pandas dataframe: terms.get_summaries() term.summary
Added subtypes and subparts as well as combined children parameters
Added morphological similarity scores and potential driver results.
Added downstream_partners and upstream_partners to VFBTerm
Draft for plot by type or connectivity
minor fixes

Full Changelog: v2.0.2...v2.1.3