diff --git a/docs/source/tutorials/vfb_neurons.ipynb b/docs/source/tutorials/vfb_neurons.ipynb index 589d4b65..17f2da86 100644 --- a/docs/source/tutorials/vfb_neurons.ipynb +++ b/docs/source/tutorials/vfb_neurons.ipynb @@ -113558,16 +113558,7980 @@ "metadata": {}, "outputs": [ { - "ename": "AttributeError", - "evalue": "'VFBTerms' object has no attribute '_skeleton'", - "output_type": "error", - "traceback": [ - "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mAttributeError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[14], line 5\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mvfb_connect\u001b[39;00m\u001b[38;5;21;01m.\u001b[39;00m\u001b[38;5;21;01mschema\u001b[39;00m\u001b[38;5;21;01m.\u001b[39;00m\u001b[38;5;21;01mvfb_term\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m VFBTerms\n\u001b[1;32m 3\u001b[0m high_simiarity_neurons \u001b[38;5;241m=\u001b[39m VFBTerms([neuron\u001b[38;5;241m.\u001b[39mterm \u001b[38;5;28;01mfor\u001b[39;00m neuron \u001b[38;5;129;01min\u001b[39;00m high_simiarity_neuron_scores])\n\u001b[0;32m----> 5\u001b[0m \u001b[43mhigh_simiarity_neurons\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mplot3d_by_type\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m/usr/local/anaconda3/lib/python3.10/site-packages/vfb_connect/schema/vfb_term.py:3161\u001b[0m, in \u001b[0;36mVFBTerms.plot3d_by_type\u001b[0;34m(self, template, verbose, query_by_label, force_reload, **kwargs)\u001b[0m\n\u001b[1;32m 3159\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{\u001b[39;00mterm\u001b[38;5;241m.\u001b[39mname\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m is not an instance soo won\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mt have a skeleton, mesh or volume\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;28;01mif\u001b[39;00m verbose \u001b[38;5;28;01melse\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[1;32m 3160\u001b[0m \u001b[38;5;28;01mcontinue\u001b[39;00m\n\u001b[0;32m-> 3161\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_skeleton\u001b[49m \u001b[38;5;129;01mor\u001b[39;00m force_reload:\n\u001b[1;32m 3162\u001b[0m term\u001b[38;5;241m.\u001b[39mload_skeleton(template\u001b[38;5;241m=\u001b[39mselected_template, verbose\u001b[38;5;241m=\u001b[39mverbose, query_by_label\u001b[38;5;241m=\u001b[39mquery_by_label, force_reload\u001b[38;5;241m=\u001b[39mforce_reload, allow_multiple\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;01mTrue\u001b[39;00m)\n\u001b[1;32m 3163\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m term\u001b[38;5;241m.\u001b[39m_skeleton:\n", - "\u001b[0;31mAttributeError\u001b[0m: 'VFBTerms' object has no attribute '_skeleton'" + "name": "stdout", + "output_type": "stream", + "text": [ + "Enforcing the display template space as JRC2018Unisex from the first skeleton found. Specify a template to avoid this.\n", + "Plotting 3D representation of 3 items\n" ] + }, + { + "data": { + "application/vnd.plotly.v1+json": { + "config": { + "plotlyServerURL": "https://plot.ly" + }, + "data": [ + { + "hoverinfo": "none", + "hovertext": " ", + "legendgroup": "VFB_jrchjzzo", + "line": { + "color": "rgb(219,94,86)", + "width": 2 + }, + "mode": "lines", + "name": "LPC1", + "showlegend": true, + "type": "scatter3d", + "x": [ + 154.15167236328125, + 153.5934295654297, + 153.18609619140625, + 152.90794372558594, + 152.7897491455078, + 152.5545654296875, + 152.20542907714844, + 151.76170349121094, + 151.35409545898438, + 151.0195770263672, + 150.73931884765625, + 150.48260498046875, + 150.51992797851562, + 150.4336700439453, + 150.41783142089844, + 150.36740112304688, + 150.4320831298828, + 150.46580505371094, + 150.70355224609375, + 150.67840576171875, + 150.74725341796875, + 151.07376098632812, + 151.2803497314453, + 151.5487060546875, + 151.82730102539062, + 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