init

.github/workflows/docs.yml

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+name: sphinx
+on: [ push, workflow_dispatch ]
+
+env:
+  DEFAULT_BRANCH: "main"
+
+jobs:
+  build-and-deploy:
+    name: Build and gh-pages
+    runs-on: ubuntu-latest
+    steps:
+      # https://github.com/marketplace/actions/checkout
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+          lfs: true
+      # https://github.com/marketplace/actions/setup-python
+      # ^-- This gives info on matrix testing.
+      - name: Install Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.9
+      # https://docs.github.com/en/actions/guides/building-and-testing-python#caching-dependencies
+      # ^-- How to set up caching for pip on Ubuntu
+      - name: Cache pip
+        uses: actions/cache@v2
+        with:
+          path: ~/.cache/pip
+          key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-
+            ${{ runner.os }}-
+      # https://docs.github.com/en/actions/guides/building-and-testing-python#installing-dependencies
+      # ^-- This gives info on installing dependencies with pip
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install .[docs]
+      - name: Debugging information
+        run: |
+          echo "github.ref:" ${{github.ref}}
+          echo "github.event_name:" ${{github.event_name}}
+          echo "github.head_ref:" ${{github.head_ref}}
+          echo "github.base_ref:" ${{github.base_ref}}
+          set -x
+          git rev-parse --abbrev-ref HEAD
+          git branch
+          git branch -a
+          git remote -v
+          python -V
+          pip list --not-required
+          pip list
+      # Build
+      - uses: ammaraskar/sphinx-problem-matcher@master
+      - name: Build Sphinx docs
+        run: |
+          cd docs
+          mkdir _build
+          make html
+      # The following supports building all branches and combining on
+      # gh-pages
+
+      # Clone and set up the old gh-pages branch
+      - name: Clone old gh-pages
+        if: ${{ github.event_name == 'push' }}
+        run: |
+          set -x
+          git fetch
+          ( git branch gh-pages remotes/origin/gh-pages && git clone . --branch=gh-pages _gh-pages/ ) || mkdir _gh-pages
+          rm -rf _gh-pages/.git/
+          mkdir -p _gh-pages/branch/
+      # If a push and default branch, copy build to _gh-pages/ as the "main"
+      # deployment.
+      - name: Copy new build (default branch)
+        if: |
+          contains(github.event_name, 'push') &&
+          contains(github.ref, env.DEFAULT_BRANCH)
+        run: |
+          set -x
+          # Delete everything under _gh-pages/ that is from the
+          # primary branch deployment.  Eicludes the other branches
+          # _gh-pages/branch-* paths, and not including
+          # _gh-pages itself.
+          find _gh-pages/ -mindepth 1 ! -path '_gh-pages/branch*' -delete
+          rsync -a docs/_build/html/ _gh-pages/
+      # If a push and not on default branch, then copy the build to
+      # _gh-pages/branch/$brname (transforming '/' into '--')
+      - name: Copy new build (branch)
+        if: |
+          contains(github.event_name, 'push') &&
+          !contains(github.ref, env.DEFAULT_BRANCH)
+        run: |
+          set -x
+          #brname=$(git rev-parse --abbrev-ref HEAD)
+          brname="${{github.ref}}"
+          brname="${brname##refs/heads/}"
+          brdir=${brname//\//--}   # replace '/' with '--'
+          rm -rf   _gh-pages/branch/${brdir}
+          rsync -a _build/dirhtml/ _gh-pages/branch/${brdir}
+      # Go through each branch in _gh-pages/branch/, if it's not a
+      # ref, then delete it.
+      - name: Delete old feature branches
+        if: ${{ github.event_name == 'push' }}
+        run: |
+          set -x
+          for brdir in `ls _gh-pages/branch/` ; do
+              brname=${brdir//--/\/}   # replace '--' with '/'
+              if ! git show-ref remotes/origin/$brname ; then
+                  echo "Removing $brdir"
+                  rm -r _gh-pages/branch/$brdir/
+              fi
+          done
+      # Add the .nojekyll file
+      - name: nojekyll
+        if: ${{ github.event_name == 'push' }}
+        run: |
+          touch _gh-pages/.nojekyll
+      # Deploy
+      # https://github.com/peaceiris/actions-gh-pages
+      - name: Deploy
+        uses: peaceiris/actions-gh-pages@v3
+        if: ${{ github.event_name == 'push' }}
+        #if: ${{ success() && github.event_name == 'push' && github.ref == 'refs/heads/$defaultBranch' }}
+        with:
+          publish_branch: gh-pages
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: _gh-pages/
+          force_orphan: true

.gitignore

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+# Custom
+.buildinfo
+tests/plots/
+tests/benchmarks/
+tests/files/
+report/
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+models/slr/untitled0.py

LICENSE

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+MIT License
+
+Copyright (c) 2021 Jens de Bruijn
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

ThirdPartyNotices.txt

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+THIRD-PARTY SOFTWARE NOTICES AND INFORMATION
+
+This project incorporates components from the projects listed below.
+
+Mesa (https://github.com/projectmesa/mesa)
+
+Copyright 2021 Core Mesa Team and contributors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.

docs/Makefile

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+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)