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ExampleDatasets

mock / sample dataset xml; Component specific dataset projects will conform to the same format

Dependencies

  • yarn / npm / ant
  • WEBAPP_PROP_FILE file (file with one property for the webapp target directory) webappTargetDir=BLAH
  • environment variables for GUS_HOME and PROJECT_HOME
  • Internal Dependencies
    • ApiCommonWorkflow (ClinEpiWorkflow and MicrobiomeWorkflow are required for those components)

Installation instructions.

  • bld ExampleDatasets; generateFromDatasets ExampleDatasets

Operating instructions.

  • Reflow commands (rf) to load datasets into GUS instance 
    rf list [ready|on_deck|running|failed|done]
rf run [real|test]
rf undo [test|real] <step name>
rf reset test
rf set [ready|kill|offline|online|stopafter|resume] <stepname_pattern> [undo]

Manifest

Datasets/lib/xml/datasets/
Nested xml structure depends on workflow graph structure. For genomics projects, one file per organism and subdirectories for organism specific datasets.