A simple demo program for the MPI message passing library for high-performance computers. This serves a similar role as 'Hello world' programs for sequential computing, and LED blinking programs for embedded systems.
It may be necessary to load one or two modules to be able to compile this software. Typically, you have to do something like:
module spider MPIto search for the available MPI versions, and then do something like:
module load OpenMPI/4.1.4-GCC-11.3.0to load the exact module that you want. (On your system the exact name will be almost certainly be different.) The MPI variant you choose can have a significant performance impact, but for this demonstration project the differences are not relevant.
To compile the program, simply do
make alland then do
sbatch primes-batch.shto submit it to the Slurm queuing system.
| File | Description |
|---|---|
| Makefile | Build instructions for the program. Do make help for details |
| primes.c | Count primes, parallelized with MPI |
| primes-sbatch.sh | Slurm batch submission file |
| .gitignore | A list of file patterns to ignore as candidates for GIT file management |
A quick reference of the Message Passing Interface (MPI) constructs that are relevant for this program.
A program using MPI code has to add a line
#include <mpi.h>to the top of the source file, and add -lmpi to the compiler flags.
Every MPI process belongs to one or more communication groups. The default communication group, called
MPI_COMM_WORLD contains all processes that participate in the computation. The communication group is passed
to almost all MPI functions.
Each group has a size (the total number of processors in the group), and all processors in the group
The following code can be used to get the rank and size:
int rank, size;
MPI_Comm_rank(MPI_COMM_WORLD, &rank);
MPI_Comm_size(MPI_COMM_WORLD, &size);double vector[SZ];
MPI_Status status;
MPI_Send(vector, SZ, MPI_DOUBLE, 2, 0, MPI_COMM_WORLD);
MPI_Recv(vector, SZ, MPI_DOUBLE, MPI_ANY_SOURCE, 0, MPI_COMM_WORLD, &status);The MPI_Send() and MPI_Recv() functions are used to send and receive data.
For MPI_Recv() the sending rank may be MPI_ANY_SOURCE, which indicates data from any
sender will be accepted. The actual sender is put in a field in &status.
Similarly, receiver may specify MPI_ANY_TAG, and the actual tag is put in a field in status.
For small messages MPI_Send() will return immediately, for large messages an MPI_Recv() is needed to accept the
data before MPI_Send() returns. This is a potential source of deadlocks.
double vector1[SZ], vector2[SZ];
MPI_Status status;
MPI_Sendrecv(vector1, SZ, MPI_DOUBLE, 2, 0,
vector2, SZ, MPI_DOUBLE, 2, 0, MPI_COMM_WORLD, &status);Here the send and receive are combined in one call. The ordering of the operations is left to the implementation. This may avoid deadlock! Send and receive buffers cannot overlap. Source and destination may be different, also size and even data type.
The combined send/receive operation is the first collective communication function. There are more:
- Reduction: apply a reduction operator such as addition or max() to an array of data distributed over the members of a group.
- Broadcast: send the same data from one member to all members of a group
- Scatter: send a different piece of data from one member to all members of a group
- Gather: collect on one member all the different pieces of data that members of the group have
- AllGather: collect on all members all the different piece of data that all members of a group have
To run an MPI program in SLURM or similar batch systems, it is best to just use the special helper program mpirun.
When you load a MPI module, see above, you usually also get a mpirun
For example:
#!/bin/bash -e
#SBATCH -t 10:00 -N 1 --mem=100M
mpirun ./primes-mpiThere are two main MPI implementations:
- Open MPI, see [https://open-mpi.org]
- MPICH, see [https://mpich.org]
See their websites for the official reference documentation of the MPI library.