This repository is an Example using GitHub Actions [egga] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2024-12-22 00:51:59.
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Transmission models of respiratory infections in carceral settings: A systematic review.
Levintow SN, Remch M, Jones EP, Lessler J, Edwards JK, Brinkley-Rubinstein L, Rice DK, Rosen DL, Powers KA.
Epidemics. 2024 Dec 6;50:100809. doi: 10.1016/j.epidem.2024.100809. Online ahead of print.
We extracted information on the diseases, populations, and settings modeled; approaches used for parameterizing models and simulating transmission; outcomes of interest and techniques for model calibration, validation, and sensitivity analyses; and types, imp …
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Exploring urban scenarios of individual residential waste sorting using a spatially explicit agent-based model.
Cohen J, Gil J, Rosado L.
Waste Manag. 2024 Dec 18;193:350-362. doi: 10.1016/j.wasman.2024.12.020. Online ahead of print.
To bridge this gap, this study presents an agent-based model (ABM) that simulates residential waste sorting in urban scenarios, incorporating TPB for the agents’ behavioural architecture (residents). Three features distinguish this ABM from previous efforts: …
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The impact of cognitive bias about infectious diseases on social well-being.
Pestow R.
Front Epidemiol. 2024 Dec 4;4:1418336. doi: 10.3389/fepid.2024.1418336. eCollection 2024.
Second, we derive an integrated economic-epidemiological differential equation model from an agent-based model that combines myopic rational choice with infectious disease dynamics. Third, we characterize axiomatically a model of an ethical, imp …
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Agent-based modeling for the tumor microenvironment (TME).
Weerasinghe HN, Burrage PM, Jr DVN, Burrage K.
Math Biosci Eng. 2024 Nov 25;21(11):7621-7647. doi: 10.3934/mbe.2024335.
If tumor cells spread to surrounding tissues or other organs, then the disease is life-threatening due to limited treatment options. This work applies an agent-based model to investigate the effect of intra-tumoral communication on tumor progression, plastici …
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Agent based modelling of blood borne viruses: a scoping review.
Ale S, Hunter E, Kelleher JD.
BMC Infect Dis. 2024 Dec 18;24(1):1411. doi: 10.1186/s12879-024-10271-w.
BACKGROUND: The models that historically have been used to model infectious disease outbreaks are equation-based and statistical models. …Agent-based modelling (ABM) is an alternative modelling approach that is gaining popularity …
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Mitigating housing market shocks: an agent-based reinforcement learning approach with implications for real-time decision support.
Olmez S, Heppenstall A, Ge J, Elsenbroich C, Birks D.
J Simul. 2024 Jul 9;18(6):921-939. doi: 10.1080/17477778.2024.2375446. eCollection 2024.
Research in modelling housing market dynamics using agent-based models (ABMs) has grown due to the rise of accessible individual-level data. …Importantly, our model shows how a central bank agent learned conservative behaviours in sensitive sc …
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Legislative rebellions and impeachments in a neural network society.
Neirotti J, Caticha N.
Phys Rev E. 2024 Nov;110(5-1):054110. doi: 10.1103/PhysRevE.110.054110.
Inspired by studies of legislative-executive conflict in modern presidential democracies in South America, we present an agent-based statistical mechanics exploration of the collective, coordinated action of strategic political actors in the legislative chamber and …
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Social network dynamics of tobacco smoking and alcohol use among persons involved with the criminal legal system (PCLS): A modeling study.
Khanna AS, Rousell N, Davis T, Zhang Y, Sheeler D, Cioe P, Martin R, Kahler CW.
Int J Alcohol Drug Res. 2024 Dec 12;12(2):54-67. doi: 10.7895/ijadr.507. Epub 2024 Oct 1.
However, collecting empirical data on these interrelationships is often hampered due to logistical and ethical challenges. METHODS: We developed an agent-based network model (ABNM) to simulate the effects of the incarceration-tobacco-alcohol syndemic in the s …
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Novel travel time aware metapopulation models and multi-layer waning immunity for late-phase epidemic and endemic scenarios.
Zunker H, Schmieding R, Kerkmann D, Schengen A, Diexer S, Mikolajczyk R, Meyer-Hermann M, Kühn MJ.
PLoS Comput Biol. 2024 Dec 16;20(12):e1012630. doi: 10.1371/journal.pcbi.1012630. Online ahead of print.
In the realm of infectious disease control, accurate modeling of the transmission dynamics is pivotal. As human mobility and commuting patterns are key components of communicable disease spread, we introduce a novel travel time aware metapopulation model. …The pro …
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Mobility and non-household environments: understanding dengue transmission patterns in urban contexts.
Peña-García VH, Ndenga BA, Mutuku FM, Bisanzio D, LaBeaud AD, Mordecai EA.
medRxiv [Preprint]. 2024 Dec 5:2024.05.28.24308061. doi: 10.1101/2024.05.28.24308061.
Mounting entomological evidence has suggested a larger role of environments other than HH in transmission. Recently, an agent-based model (ABM) estimated that over half of infections occur in non-household (NH) environments like workplaces, markets, and recre …
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