Remove ApplicationGraph and its implementations

[Lipen]

This PR removes ApplicationGraph from jacodb. This will be moved to usvm-dataflow.

[github-actions]

Lifecycle test results

78 tests  ±0   78 ✅ ±0   2m 38s ⏱️ +3s
 7 suites ±0    0 💤 ±0 
 7 files   ±0    0 ❌ ±0 

Results for commit 71541ec. ± Comparison against base commit b6d907c.

[github-actions]

Test results on JDK 19

 69 files  ±0   69 suites  ±0   4m 46s ⏱️ +8s
552 tests ±0  542 ✅ ±0  10 💤 ±0  0 ❌ ±0 
580 runs  ±0  570 ✅ ±0  10 💤 ±0  0 ❌ ±0 

Results for commit 71541ec. ± Comparison against base commit b6d907c.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 69.89%. Comparing base (b6d907c) to head (71541ec).
Report is 1 commits behind head on neo.

Additional details and impacted files

@@             Coverage Diff              @@
##                neo     #286      +/-   ##
============================================
+ Coverage     69.41%   69.89%   +0.47%     
+ Complexity     2436     2430       -6     
============================================
  Files           253      252       -1     
  Lines         14695    14582     -113     
  Branches       2140     2107      -33     
============================================
- Hits          10201    10192       -9     
+ Misses         3612     3509     -103     
+ Partials        882      881       -1     

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[github-actions]

Test results on JDK 11

 69 files  ±0   69 suites  ±0   5m 13s ⏱️ +3s
552 tests ±0  544 ✅ ±0  8 💤 ±0  0 ❌ ±0 
580 runs  ±0  572 ✅ ±0  8 💤 ±0  0 ❌ ±0 

Results for commit 71541ec. ± Comparison against base commit b6d907c.

[github-actions]

Test results on JDK 8

 69 files  ±0   69 suites  ±0   7m 29s ⏱️ +11s
552 tests ±0  539 ✅ ±0  13 💤 ±0  0 ❌ ±0 
580 runs  ±0  567 ✅ ±0  13 💤 ±0  0 ❌ ±0 

Results for commit 71541ec. ± Comparison against base commit b6d907c.