pyproject.toml

[tool.poetry]
name = "DOME"
version = "0.1.0"
description = ""
authors = ["Giulia Baldini <Giulia.Baldini@uk-essen.de>", "Kamyar Arzideh <Kamyar.Arzideh@uk-essen.de>"]
packages = [
    { include = "dome" },
]

[tool.poetry.dependencies]
python = "^3.8"
transformers = "^4.19.2"
datasets = "2.2.2"
dkpro-cassis = "^0.7.2"

openpyxl = { version = "^3.0.10", optional = true }
fhir-pyrate = {git = "https://github.com/UMEssen/FHIR-PYrate.git", branch = "main", optional = true}
wandb = { version = "^0.13.3", optional = true }
tensorboardX = { version = "^2.5", optional = true }
seqeval = { version = "^1.2.2", optional = true }
python-dotenv = { version = "^0.20.0", optional = true }


[tool.poetry.dev-dependencies]
pre-commit = "^2.14.0"
flake8 = "3.9.2"
mypy = "0.910"
black = "^22.3.0"
jupyter = "^1.0.0"

[tool.poetry.extras]
train = ["fhir-pyrate", "openpyxl", "wandb", "tensorboardX", "seqeval", "python-dotenv"]

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[virtualenvs]
create = true
in-project = true

[tool.isort]
profile = "black"
line_length = 88