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environment.yaml
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name: mitochondria_m2_wdl
channels:
- conda-forge
- defaults
- bioconda
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.34.3=heb4867d_0
- ca-certificates=2024.8.30=hbcca054_0
- cromwell=86=ha770c72_0
- dbus=1.13.18=hb2f20db_0
- expat=2.5.0=h6a678d5_0
- findutils=4.6.0=h7f98852_1001
- freetype=2.12.1=h4a9f257_0
- gettext=0.21.0=h39681ba_1
- glib=2.69.1=he621ea3_2
- htslib=1.21=h5efdd21_0
- icu=73.1=h6a678d5_0
- krb5=1.20.1=h143b758_1
- ld_impl_linux-64=2.38=h1181459_1
- libblas=3.9.0=25_linux64_openblas
- libcblas=3.9.0=25_linux64_openblas
- libcurl=8.9.1=h251f7ec_0
- libdeflate=1.21=h4bc722e_0
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=hd590300_2
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.4=h6a678d5_0
- libgcc=14.2.0=h77fa898_1
- libgcc-ng=14.2.0=h69a702a_1
- libgfortran=14.2.0=h69a702a_1
- libgfortran5=14.2.0=hd5240d6_1
- libgomp=14.2.0=h77fa898_1
- liblapack=3.9.0=25_linux64_openblas
- libnghttp2=1.57.0=h2d74bed_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.28=pthreads_h94d23a6_1
- libpng=1.6.39=h5eee18b_0
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-ng=11.2.0=h1234567_1
- libuuid=2.38.1=h0b41bf4_0
- libxcb=1.15=h7f8727e_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.10.4=hf1b16e4_1
- libzlib=1.2.13=h4ab18f5_6
- ncurses=6.5=he02047a_1
- numpy=2.1.3=py312h58c1407_0
- openjdk=11.0.13=h87a67e3_0
- openssl=3.4.0=hb9d3cd8_0
- pandas=2.2.3=py312hf9745cd_1
- pcre=8.45=h295c915_0
- pip=23.3.1=py312h06a4308_0
- pysam=0.22.1=py312hcfdcdd7_2
- python=3.12.2=hab00c5b_0_cpython
- python-dateutil=2.9.0.post0=pyhff2d567_0
- python-tzdata=2024.2=pyhd8ed1ab_0
- python_abi=3.12=5_cp312
- pytz=2024.1=pyhd8ed1ab_0
- readline=8.2=h5eee18b_0
- samtools=1.21=h50ea8bc_0
- setuptools=68.2.2=py312h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.41.2=h5eee18b_0
- tk=8.6.13=noxft_h4845f30_101
- tzdata=2023d=h04d1e81_0
- vcfpy=0.13.8=pyhdfd78af_0
- wheel=0.41.2=py312h06a4308_0
- womtool=36=0
- xz=5.4.5=h5eee18b_0
- zlib=1.2.13=h4ab18f5_6
prefix: /home/vlab/miniconda3/envs/cromwell