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__author__ = "Yinchong Yang" | ||
__copyright__ = "Siemens AG, 2017" | ||
__licencse__ = "MIT" | ||
__version__ = "0.1" | ||
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""" | ||
MIT License | ||
Copyright (c) 2017 Siemens AG | ||
Permission is hereby granted, free of charge, to any person obtaining a copy | ||
of this software and associated documentation files (the "Software"), to deal | ||
in the Software without restriction, including without limitation the rights | ||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
copies of the Software, and to permit persons to whom the Software is | ||
furnished to do so, subject to the following conditions: | ||
The above copyright notice and this permission notice shall be included in all | ||
copies or substantial portions of the Software. | ||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
SOFTWARE. | ||
""" | ||
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import sys | ||
import datetime | ||
import time | ||
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import os | ||
import numpy as np | ||
import pickle | ||
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from keras.layers import Input, GRU, LSTM, Dense, Dropout, Masking, BatchNormalization | ||
from keras.models import Model | ||
from keras.optimizers import * | ||
from keras.regularizers import l2 | ||
from keras.preprocessing.sequence import pad_sequences | ||
from keras.utils.np_utils import to_categorical | ||
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from sklearn.metrics import average_precision_score, roc_auc_score, accuracy_score, precision_score, recall_score | ||
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# Custom Functions ----------------------------------------------------------------------------------------------------- | ||
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from TTRNN import TT_GRU, TT_LSTM | ||
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def get_clips(class_name): | ||
files = os.listdir(data_path + class_name) | ||
files.sort() | ||
clip_list = [] | ||
for this_file in files: | ||
clip_list.append( data_path + class_name + '/' + this_file ) | ||
return clip_list | ||
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def load_data(inds, mode = 'train', maxlen = 85): | ||
N = len(inds) | ||
X = np.zeros((N, maxlen, 120*160*3), dtype='int8') | ||
if mode == 'train': | ||
set = train_set | ||
else: | ||
set = test_set | ||
for i in range(N): | ||
read_in = open(set[0][inds[i]]) | ||
this_clip = pickle.load(read_in)[0] | ||
read_in.close() | ||
this_clip = this_clip.reshape(this_clip.shape[0], -1) | ||
this_clip = (this_clip - 128).astype('int8') | ||
X[i] = pad_sequences([this_clip], maxlen=maxlen, truncating='post', dtype='int8')[0] | ||
Y = set[1][inds] | ||
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return [X, Y] | ||
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# Load the data -------------------------------------------------------------------------------------------------------- | ||
np.random.seed(11111986) | ||
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# Settings: | ||
# CV_setting = int(sys.argv[1]) | ||
# model_type= int(sys.argv[2]) # [0, 1] for GRU, LSTM | ||
# use_TT = int(sys.argv[3]) # [0, 1] for False, True | ||
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CV_setting = 0 | ||
model_type = 1 | ||
use_TT = 0 | ||
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# Had to remove due to anonymity | ||
data_path = '' | ||
write_out_path = '' | ||
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files = os.listdir(data_path) | ||
files.sort() | ||
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N = len(files) | ||
targets = ['']*N | ||
for l in range(N): | ||
# l = 0 | ||
this_file = files[l] | ||
this_file_split = this_file.split('_') | ||
this_file_split[-1] = this_file_split[-1].split('.')[0] | ||
targets[l] = this_file_split[-2] + '_' + this_file_split[-1] | ||
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targets = np.array(targets) | ||
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classes = np.unique(targets) | ||
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Y = np.zeros(N, dtype='int8') | ||
for l in range(N): | ||
Y[l] = np.where(classes == targets[l])[0] | ||
Y = to_categorical(Y).astype('int8') | ||
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GLOBAL_MAX_LEN=85 | ||
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clips = np.array([data_path + this_file for this_file in files]) | ||
shuffle_ind = np.random.choice(range(N), N, False) | ||
clips = clips[shuffle_ind] | ||
Y = Y[shuffle_ind] | ||
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CV_splits = np.array_split(np.arange(N), 5) | ||
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test_inds = CV_splits[CV_setting] | ||
train_inds = np.setdiff1d(np.arange(N), test_inds) | ||
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train_set = [clips[train_inds], Y[train_inds]] | ||
test_set = [clips[test_inds], Y[test_inds]] | ||
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n_tr = len(train_set[0]) | ||
n_te = len(test_set[0]) | ||
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# X_train, Y_train = load_data(np.arange(0, 512), mode='train') | ||
X_train, Y_train = load_data(np.arange(0, n_tr), mode='train') | ||
# X_test, Y_test = load_data(np.arange(0, 256), mode='test') | ||
X_test, Y_test = load_data(np.arange(0, n_te), mode='test') | ||
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# Define the model ----------------------------------------------------------------------------------------------------- | ||
dropoutRate = 0.25 | ||
alpha = 1e-2 | ||
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tt_input_shape = [4, 20, 20, 36] | ||
tt_output_shape = [4, 4, 4, 4] | ||
tt_ranks = [1, 4, 4, 4, 1] | ||
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input = Input(shape=(GLOBAL_MAX_LEN, 120*160*3)) | ||
if model_type == 0: | ||
if use_TT == 0: | ||
rnn_layer = GRU(output_dim=225, | ||
return_sequences=False, | ||
dropout=0.25, recurrent_dropout=0.25, activation='tanh') | ||
elif use_TT == 1: | ||
rnn_layer = TT_GRU(tt_input_shape=tt_input_shape, tt_output_shape=tt_output_shape, | ||
tt_ranks=tt_ranks, | ||
return_sequences=False, | ||
dropout=0.25, recurrent_dropout=0.25, activation='tanh') | ||
else: | ||
if use_TT == 0: | ||
rnn_layer = LSTM(output_dim=225, | ||
return_sequences=False, | ||
dropout=0.25, recurrent_dropout=0.25, activation='tanh') | ||
elif use_TT == 1: | ||
rnn_layer = TT_LSTM(tt_input_shape=tt_input_shape, tt_output_shape=tt_output_shape, | ||
tt_ranks=tt_ranks, | ||
return_sequences=False, | ||
dropout=0.25, recurrent_dropout=0.25, activation='tanh') | ||
h = rnn_layer(input) | ||
output = Dense(output_dim=47, activation='softmax', kernel_regularizer=l2(alpha))(h) | ||
model = Model(input, output) | ||
model.compile(optimizer=Adam(1e-3), loss='categorical_crossentropy', metrics=['accuracy']) | ||
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if use_TT == 1: | ||
compress_factor = rnn_layer.compress_factor | ||
else: | ||
compress_factor = 1 | ||
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print n_tr | ||
print n_te | ||
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# Start training ------------------------------------------------------------------------------------------------------- | ||
if True: | ||
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file_name = str(CV_setting) + '_' + str(model_type) + '_' + str(use_TT) | ||
start = datetime.datetime.now() | ||
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for l in range(101): | ||
print 'iter ' + str(l) | ||
model.fit(X_train, Y_train, nb_epoch=1, batch_size=16, verbose=1, validation_data=[X_test, Y_test]) | ||
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stop = datetime.datetime.now() | ||
print stop-start | ||
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res = model.evaluate(X_test, Y_test) | ||
save_name = str(CV_setting) +'_'+ str(model_type) + '_' + str(use_TT) | ||
write_out = open(write_out_path + save_name + '.pkl', 'wb') | ||
pickle.dump([model.get_weights(), res, stop-start], write_out) | ||
write_out.close() |