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Releases: TomKellyGenetics/leiden

leiden 0.4.3.1

08 Nov 02:20
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Bug fix to avoid archive when dependencies are updated.

  • corrects mismatched chunk delimiters in documentation

Resolves:
yihui/knitr#2057
yihui/knitr#2306


What's Changed

New Contributors

  • @yihui made their first contribution in #16

Full Changelog: 0.4.2...0.4.3.1

leiden 0.4.3

12 Sep 01:15
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  • removed deprecated method to create sparse matrices

  • correct links in citations and vignettes

Full Changelog: 0.4.2...0.4.3

leiden 0.4.2

09 May 12:26
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  • migrates bug fixes to conda environment and limit on total cells to refactored package

  • allows calling igraph::community_leiden for supported parameters (requires igraph v1.2.7 or later)

  • automatically calls native R version of leiden rather than Python to improve performance

  • updates vignettes and unit tests to ensure consistent results with past versions

  • migrates changes to retain on CRAN to leiden 0.4.0 (alpha) with igraph::community_leiden call

  • updates the benchmarking vignette to compare performance to legacy versions using reticulate

Full Changelog: 0.3.10...0.4.2

leiden 0.3.10

25 Apr 12:03
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  • removes limitation on number of cells (disables scientific notation within function call): resolves #12

  • resolves conflict between base and r-reticulate conda environments on loading: resolves #20

  • updates conda environment in interactive sessions only for compliance to CRAN checks

  • resolves formatting error in Rmarkdown vignettes (yihui/knitr#2057)

  • update testing for bipartite graphs for compatibility with newer version

What's Changed

New Contributors

  • @yihui made their first contribution in #16

Full Changelog: 0.3.9...0.3.10

leiden 0.3.8

24 May 04:30
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  • bug fixes for vignettes to retain on CRAN

leiden 0.4.1 alpha release

26 Jan 22:59
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Pre-release

migrates changes to retain on CRAN to leiden 0.4.0 (alpha)

leiden 0.3.7

26 Jan 22:53
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  • remove cairo graphics from vignette to retain on CRAN

leiden 0.4.0 alpha release

07 Dec 07:38
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Pre-release

adds calling community_leiden in igraph (requires development version of igraph 0.2.7 or later)

leiden 0.3.6

07 Dec 07:35
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  • add methods for multiplex community detection from a list of graphs (requires leidenalg 0.7.1)

  • add support for maximum community size (depends on leidenalg 0.8.2), if available

leiden 0.3.5

07 Dec 07:34
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  • background changes to build vignettes on CRAN